FC873106
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.397e-40 Identity = 74/158 (46.84%), Postives = 114/158 (72.15%), Query Frame = 1 Query: 247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 YD+LFK++LIGDSGVGK+ L+ RF ++ F+ STIG++F R++ ++ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T +FEN++ W+K ++++ + + +L+GNK D+ R V E A+ A + + F ETSA S+NV+ AF Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAF 162
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40 Identity = 79/158 (50.00%), Postives = 111/158 (70.25%), Query Frame = 1 Query: 247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 YDYL K++LIGDSGVGKS LL RF+++ F+ +TIG++F R+I ++ K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT +F N+ W++ + H ++ ML+GNK D+ + V + +S A++ F+ETSA S+NVE AF Sbjct: 12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAF 169
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL + V A+ FA+ F+ETSA + NVE +F Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL + V A+ FA+ F+ETSA + NVE +F Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL + V A+ FA+ F+ETSA + NVE +F Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL + V A+ FA+ F+ETSA + NVE +F Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40 Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 1 Query: 247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 YDYL K++LIGDSGVGKS LL RF+++ F+ +TIG++F R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G LL+YDVT +F+NV W + H N+ +L+GNK D R VS E Q+ A++ F+E SA ++NV+ AF Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAF 163
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3) HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720 +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL + V A+ FA+ F+ETSA + NVE +F Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40 Identity = 81/166 (48.80%), Postives = 113/166 (68.07%), Query Frame = 1 Query: 226 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTF-FMETSALESLNVENAF 720 A AD+++DYLFK++LIGDS VGK+ ++ F ++ ++TIGV+F RS+ +D K VK Q+WDTAGQER+R IT +YYR A A++ YD+TR TFE++ W+ E+ + +N+VIML+GNK DL R V EDA + AEK +ETSA ES N+E F Sbjct: 7 ARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVF 172
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40 Identity = 82/162 (50.62%), Postives = 114/162 (70.37%), Query Frame = 1 Query: 238 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEK-EKTFFMETSALESLNVENAF 720 D+ YD+LFK+VL+GD+ VGK+ ++ RF FS STIGV+F +++ + K VK QIWDTAGQER+R IT +YYR A GA+L YD+T+ +F +V W++++R + SNIV +L+GNK+DL LR VS +AQS AE + +ETSA +S NVE AF Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173 The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bpback to top |