FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.366e-64
Identity = 117/162 (72.22%), Postives = 144/162 (88.89%), Query Frame = 1
Query:  235 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            + ++YDYL+K+VLIGDSGVGKSNLLSRFT+NEFSLE+KSTIGVEFATR+I+ + K +KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+ +  T+++VERW+ ELR++ D NI IMLVGNK+DLRHLR VST++A+ F+EK K  F+ETSAL+S NVE AF
Sbjct:    6 SQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAF 167          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.934e-62
Identity = 114/157 (72.61%), Postives = 136/157 (86.62%), Query Frame = 1
Query:  250 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            DY+FKVVLIGDS VGKS LL+RF +NEF+L+SK+TIGVEF TR++ +D + VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F++V RWL+ELR H D NIVIML+GNK+DL  LR V TEDA+ FAE+E  FFMETSALES NVENAF
Sbjct:   16 DYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAF 172          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.125e-61
Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 1
Query:  235 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            A+   DY+FKVVLIGDS VGKS +L+RF +NEFSL+SKSTIGVEF TR++ +D K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR+H D NIVI+L+GNK DL + R V TEDA+ FAEKE  FF+ETSALE+ NVE+AF
Sbjct:   10 ANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAF 171          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 6.032e-60
Identity = 108/159 (67.92%), Postives = 136/159 (85.53%), Query Frame = 1
Query:  244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            DYD LFK+VLIGDSGVGKSNLLSRFTKNEF+++SKSTIGVEFATR++ +D K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ + L+GNK+DL HLRAV TE++++FA++ +  F ETSAL S NV+ AF
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.877e-60
Identity = 110/162 (67.90%), Postives = 135/162 (83.33%), Query Frame = 1
Query:  235 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            A    DY+FKVVLIGDS VGKS +L+RF +NEFSL+SK+TIGVEF TR++ +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR H D NIVIML+GNK DL   RAV TEDA+ FA+KE  FF+ETSA+E+ N+E+AF
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAF 169          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.755e-59
Identity = 109/159 (68.55%), Postives = 136/159 (85.53%), Query Frame = 1
Query:  244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            DYDYLFK+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR+I V++K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ + L+GNK+DL HLRAV T++A++FA + +  F ETSAL S NV+ AF
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 167          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.310e-58
Identity = 108/162 (66.67%), Postives = 133/162 (82.10%), Query Frame = 1
Query:  235 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            A    DY+FKVVLIGDS VGK+ +L+RF +NEFSL+SK+TIGVEF TR++ +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR H D NIVIML GNK DL   RAV TEDA+ FA+KE  FF+ETSA+E+  +E+AF
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAF 169          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.310e-58
Identity = 109/163 (66.87%), Postives = 137/163 (84.05%), Query Frame = 1
Query:  232 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            RA++DY+++FKVVLIG+SGVGK+NLLSRFT+NEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF
Sbjct:    4 RAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAF 166          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.645e-58
Identity = 110/163 (67.48%), Postives = 135/163 (82.82%), Query Frame = 1
Query:  232 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            R D+DY+++FKVVLIG+SGVGK+NLLSRFT+NEFS +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF
Sbjct:    4 RTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAF 166          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.145e-57
Identity = 108/161 (67.08%), Postives = 135/161 (83.85%), Query Frame = 1
Query:  238 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            ++DY+++FKVVLIG+SGVGK+NLLSRFT+NEFS +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF
Sbjct:    6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 166          
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_DICDI2.366e-6472.22Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RGP1_ORYSJ4.934e-6272.61Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA7.125e-6169.75Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
YPT31_YEAST6.032e-6067.92GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11D_TOBAC7.877e-6067.90Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
YPT32_YEAST1.755e-5968.55GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RB11C_TOBAC3.310e-5866.67Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB25_BOVIN3.310e-5866.87Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB25_MOUSE5.645e-5867.48Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN2.145e-5767.08Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
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