FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873106_ssr133 microsatellite FC873106_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873106_ssr40 microsatellite FC873106_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10917 contig Ccv1_Contig10917:98..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.802e-57
Identity = 108/161 (67.08%), Postives = 135/161 (83.85%), Query Frame = 1
Query:  238 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            ++DY+++FKVVLIG+SGVGK+NLLSRFT+NEFS +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF
Sbjct:    6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 166          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.391e-56
Identity = 108/165 (65.45%), Postives = 133/165 (80.61%), Query Frame = 1
Query:  235 ADDDY---DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +DDD    +YLFK+V+IGDS VGKSNLL+R+ +NEF+  SK+TIGVEF T+S+ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TFENV RWL EL  H+D+ +  ML+GNK DL  +RAVS E+ +S AE E  FFMETSAL+S NV+ AF
Sbjct:    2 SDDDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAF 166          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.098e-56
Identity = 104/157 (66.24%), Postives = 132/157 (84.08%), Query Frame = 1
Query:  250 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +YLFK+V+IGDS VGKSNLLSR+ +NEFS  SK+TIGVEF T+S+ ++ K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TFE+V RWL EL+ H+D+ +  MLVGNK DL ++RAVS E+ ++ AE+E  FF+ETSAL+S NV+ AF
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAF 166          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.102e-53
Identity = 96/161 (59.63%), Postives = 132/161 (81.99%), Query Frame = 1
Query:  238 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +++ +YLFK+V+IGDS VGKSNLL+RFT+NEF+ ++K+TIGV+F T+SI +D+K + AQ WDTAGQER+RA+TS YYRGAVGA++VYD+T  ++F+NV RWL ELR+  + +I+IM+VGNK+DL   R V T++AQ+FAE  K  F+ETSAL S NV  +F
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSF 164          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.945e-50
Identity = 92/159 (57.86%), Postives = 128/159 (80.50%), Query Frame = 1
Query:  244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +YDYL K+V+IGDSGVGKSNLLSR+ KNEFS+   STIGVEF+T+++++D+K++K Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++    +F N+E+WLK+ R++   +  IMLVGNK+DL+  R VST + + FAEK    F+ETSAL+S NVE AF
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAF 165          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.884e-45
Identity = 88/158 (55.70%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.884e-45
Identity = 88/158 (55.70%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.884e-45
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D+K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D+K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 87/158 (55.06%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            Y+Y+FK ++IGD GVGKS LL +FT+N+F  +S  TIGVEF TR + V++K +K QIWDTAGQER+RA+T +YYRGA GALLVYD+TR +T+ ++  WL + R+ T+ N VIML+GNK DL   R V+ E+A +FA++    F+E+SA    NVE AF
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAF 162          
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_RABIT2.802e-5767.08Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
ARA4_ARATH1.391e-5665.45Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH3.098e-5666.24Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RB11C_DICDI1.102e-5359.63Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI1.945e-5057.86Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTV4_VOLCA1.884e-4555.70GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.884e-4555.70GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_MAIZE1.884e-4556.33Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MAIZE2.460e-4556.33Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB14_DICDI5.481e-4555.06Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
back to top