FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +    F  K+   + + SA  + N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
[Close]
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK++++GD G GK+  L R    EF   ++ T+GV+        +   ++ + WDTAGQE+Y  +  AYY     A++++DVT   T+ N++RW ++LR     NI I+L GNK D+   R +  +   S+  K+   + E SA  + N E  F
Sbjct:   14 FKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVDVPS-RQIKPKHV-SYHRKKCLQYYEMSAKNNCNFEKPF 164
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_XENLA3.955e-1935.06GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT3.955e-1935.06GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB3.955e-1935.06GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE3.955e-1935.06GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA3.955e-1935.06GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN3.955e-1935.06GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK3.955e-1935.06GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA3.955e-1935.06GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN3.955e-1935.06GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN4_ARATH3.955e-1933.77GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
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