FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 50/162 (30.86%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  241 DDYDYL--FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            D  +Y+  +K++L+GD GVGK+  + R    EF  +   T+GVE      + +    +  +WDTAGQE++  +   YY  +  A++++DV+  +T++NV  W +++       I ++LVGNK D++  R V +   Q F  K    + + SA  + N E  F
Sbjct:    2 DSQEYIPQYKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDI-TRVCETIPMVLVGNKVDVKD-RQVKSRQIQ-FHRKRNLQYYDLSARSNYNFEKPF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 48/172 (27.91%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  232 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---------DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            R D       KV+ +G++ VGKS ++ R+ +  F  + ++TIG+++    +++ D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +FE+++ WL E++         D+ D NIV  +  NK D    R V   + + ++E +   + ETSA     +   F
Sbjct:    8 RKDSRKPLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLD-NIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSAQSGEGINEMF 178          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++GD GVGKS L  +  ++ F  E   TI   +  +   +D +     + DTAGQE Y A+   Y R   G LLVY++T   +F+ +  + ++ LR        ++LV NK DL   R VS  + +  A+     ++ETSA   LNVE AF
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +KVV++G  GVGKS +  +F  ++F      TI   + T+ +R+D++     I DTAGQ  + A+   Y RG  G ++ Y VT   +F+   ++ KEL     HT   I ++LVGNK DL   R VSTE+  S A++    F ETSA     +++AF
Sbjct:   21 YKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHT-YEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAF 174          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + I +D++V    + DTAGQE Y A+   Y R   G LLVY +T   +FE V  + ++ LR        +++V NK DL + R V   + +  A++     +ETSA + +NV+ AF
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAF 163          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  + + +D++V    + DTAGQE Y A+   Y R   G LLVY +T   +FE +  + ++ LR        +++VGNK DL   R V+ ++ ++ A+     F+ETSA   +NV+ AF
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  256 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F+  + + ++ LR   D +I  +LVGNK DL   R V   + Q  A++    ++ETSA    NV+  F
Sbjct:   11 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVF 165          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +KVV++G  GVGKS +  +F  ++F      TI   + T+ +R+D++     I DTAGQ  + A+   Y RG  G ++ Y VT   +F+   ++ KEL     HT   I ++LVGNK DL   R VSTE+  + A      F ETSA     +++AF
Sbjct:   21 YKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHT-YEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDDAF 174          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---DHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +KVV++G  GVGKS +  +F  ++F      TI   + T+ +R+D++     I DTAGQ  + A+   Y RG  G ++ Y VT   +F+   ++ KEL     HT   I ++LVGNK DL   R VSTE+  + A      F ETSA     +++AF
Sbjct:   21 YKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHT-YEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAF 174          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 45/158 (28.48%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R+V   + + +AE     + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_PLAFA7.459e-1830.86GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
DJ27B_XENLA7.459e-1827.91DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
RAS_SCHPO9.742e-1834.84Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RIT2_HUMAN1.272e-1736.94GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RAS_CRYNE1.272e-1734.84Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RASL_COLTR1.662e-1734.19Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RALA_DROME1.662e-1735.26Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RIT2_RAT2.170e-1736.31GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RIT2_MOUSE2.170e-1736.31GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
DJC27_CHICK2.170e-1728.48DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
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