FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +   +WDTAGQE+   +   YY      ++++DVT  +T++NV  W ++L      NI I+L GNK D++  +  +   A +F  K+   + + SA  + N E  F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDVKERKVKA--KAITFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS +  +F  + F  +   TI   +  R IR+DD+     I DTAGQ  + A+   Y R   G ++ Y +T   +F  V R  K+L  R     +  ++LVGNK+DL+ LR VS E+  S A +    F ETSA     +++ F
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEV-REFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVF 175          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 47/153 (30.72%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            ++ ++GD GVGK+++  +F  N F      TI  +   +   +DD+V    I DTAGQ+   AI + + +   G +LVY VT   +F+ ++ +L +++      + I+++ NK+DL   R V+ ++ ++FA +    FME SA   LN++  F
Sbjct:   16 RLCVMGDGGVGKTSITIQFISNHFVNCYDPTIE-DLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVF 167          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 44/158 (27.85%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    + V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NI+ ++  NK D    R V   + + +AE +   + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMF 175          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 44/158 (27.85%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R +   + + +AE +   + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSAQTGEGINEMF 175          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 44/158 (27.85%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    + V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NI+ ++  NK D    R V   + + +AE +   + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMF 175          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALE-SLNVENAF 720
            +K+V++GD GVGKS L  +F +  F  +   TI   +   +  +D++     + DTAGQE + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL HLR V+ +  +  A K    ++ETSA +  LNV+  F
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALE-SLNVENAF 720
            +K+V++GD GVGKS L  +F +  F  +   TI   +   +  +D++     + DTAGQE + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL HLR V+ +  +  A K    ++ETSA +  LNV+  F
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 44/158 (27.85%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R +   + + +AE     + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 45/158 (28.48%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  262 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV  +  NK D    R V   + + +AE +   + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMF 175          
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SPI1_SCHPO2.834e-1731.82GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RIT1_MOUSE3.702e-1735.26GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RASU_DICDI3.702e-1730.72Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
DJC27_PONAB3.702e-1727.85DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]
DJC27_MOUSE3.702e-1727.85DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]
DJC27_HUMAN3.702e-1727.85DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RASM_RAT4.835e-1735.90Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE4.835e-1735.90Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
DJC27_RAT4.835e-1727.85DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
DJC27_BOVIN4.835e-1728.48DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
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