FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  256 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            L K+ ++GD GVGK+++  +F  N F      TI   +  + + +DD+V    I DTAGQ+   A+   + R   G +LVY VT   +F+ V+ + +++    D  ++ IM++GNK+DL   R V+ ++ +  A      FME SA   LNVE  F
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVF 164          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVE 711
            FK+VL+GD G GK+  + R    +F  +  +T+GVE        +   ++  +WDTAGQE++  +   YY     A  ++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  +   +F  K+   + + SA  + N E
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKD-RKVKAKTI-TFHRKKNLQYYDISAKSNYNFE 157          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G SGVGKS L  +  +N F  E   TI   +  + + +D +     I DT GQE Y A+   Y R   G L V+ +    +FE++  + ++L+   DS ++ ++LVGNK DL   R V T+ AQ  A      F+ETSA     VE+AF
Sbjct:    4 YKLVVVGASGVGKSALTIQLIQNHFVDEYDPTIQDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQLKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQELARSYGIPFIETSAKTRQRVEDAF 156          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS +  +F  + F  +   TI   +  R IR+DD+     I DTAGQ  + A+   Y R   G ++ Y +T   +F  V R  K+L  R     +  ++LVGNK+DL+ LR V+ E+  + A +    F ETSA     +++ F
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEV-REFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVF 175          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL   R+V T+ AQ  A      F+ETSA     VE+AF
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RSVDTKQAQDLARSYGIPFIETSAKTRQRVEDAF 156          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEK-EKTFFMETSALESLNVENAF 720
            FK+V++G  GVGKS L  +F +  F  +   TI   +  + + VD      +I DTAG E++ A+   Y +   G +LVY +  + TF  +    ++ LR     ++ ++LVGNK DL   R +STE  +  A K    +F+E SA   +NVE  F
Sbjct:    6 FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIF 160          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRV------DDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-------RDHT---DSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVE 711
            FKV+L+GD   GK+  ++R    EF  +  STIGVE       V      + + V   + DTAGQE++  +   YY  +   LL +DVT  VT++NVE W +++       RD +   +  + I+LVGNK D++  R + T+  + F   +   ++E SA ++ N E
Sbjct:    7 FKVILVGDGATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLLFFDVTNRVTYKNVESWYRDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKD-REIRTQTVK-FHRSKNIPYVEISAKDNFNYE 171          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL   R V T+ AQ  A      F+ETSA     VE+AF
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQELARSYGIPFIETSAKTRQRVEDAF 156          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL   R V T+ AQ  A      F+ETSA     VE+AF
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQELARSYGIPFIETSAKTRQRVEDAF 156          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RASK_HUMAN (GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  259 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL   R V T+ AQ  A      F+ETSA     VE+AF
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAF 156          
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASY_DICDI1.077e-1633.97Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RAN_BRUMA1.077e-1633.11GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
RASK_MSVKI1.407e-1636.13GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]
RIT1_HUMAN1.837e-1633.97GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RAS_CARAU1.837e-1635.48Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RAPA_DICDI1.837e-1633.97Ras-related protein rapA OS=Dictyostelium discoide... [more]
RAN_GIALA1.837e-1632.93GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]
RASK_RAT2.399e-1635.48GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]
RASK_MOUSE2.399e-1635.48GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RASK_HUMAN2.399e-1635.48GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
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