FC873106

Overview
NameFC873106
Unique NameFC873106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+  L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +FEN+  W++ + +H   ++  M++GNK D    R VS E  +  A      FMETSA  ++N+ENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 85/159 (53.46%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  244 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            +YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V+TE A++FA++    FMETSA  + NV+ AF
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 79/158 (50.00%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G + VYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+ETSA  S+NVE AF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAF 162          
BLAST of FC873106 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 80/158 (50.63%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  247 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKEKTFFMETSALESLNVENAF 720
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162          
The following BLAST results are available for this feature:
BLAST of FC873106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_RAT5.672e-4250.63Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE5.672e-4250.63Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA5.672e-4250.63Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN5.672e-4250.63Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CHICK5.672e-4250.63Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8A_CANFA5.672e-4250.63Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN5.672e-4250.63Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
YPTM2_MAIZE7.407e-4253.46GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB8_DISOM7.407e-4250.00Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_PONAB7.407e-4250.63Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873106 ID=FC873106; Name=FC873106; organism=Citrus clementina; type=EST; length=722bp
ACCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAA
GAATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCA
CCTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGC
GTTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAG
AAGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACG
ATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCA
AATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATC
CACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGG
TCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCT
ATCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGA
TGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGC
TTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAG
GCTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTT
CGCTGAGAAAGAGAAAACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGT
TGAATGTTGAAAATGCCTTCAC
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