FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.384e-41
Identity = 89/176 (50.57%), Postives = 106/176 (60.23%), Query Frame = 2
Query:   29 KMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSG-KPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGG---IADCGQL 544
            K+  P+ FFD+ +  QPAG +  ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   FHRV+  FM Q            ESIYG  F DE+F  KH    +LSM N G  TNGSQFF+ T  T  LDG HVVFGQV+ G +VV+ IE     +   +KP     I  CG+L
Sbjct:    4 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE--NQKTDAASKPFAEVRILSCGEL 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.479e-41
Identity = 88/164 (53.66%), Postives = 104/164 (63.41%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGK--PLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            M  PK +FD+++GG P G I  EL+ DV P+TAENF  LC G+ G+ KS    PL YKGS FHRVI  FM Q            ESIYG KF DENF  KH  P +LSM NAGP TNGSQ F+    T  LDGKHVVFG+V+EG  +V+ IEK  +  G T+KP
Sbjct:    1 MTRPKAYFDISIGGTPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDG-TDKP 163          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.767e-41
Identity = 86/172 (50.00%), Postives = 108/172 (62.79%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            M N   +FD+T+  +PAG +  ELF DV P+TA NF+ LC G+K   ++G  L Y GSSFHR I GFM Q            ESIYG KF DENF  KH  P +LSM NAGPGTNGSQFF+ T  T  LDGKHVVFG+V+    +V+ IE + ++S R ++   I+  G LS
Sbjct:    1 MSNTIAYFDITIANEPAGRLTFELFDDVVPKTANNFKHLCIGDK-TNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVLS 171          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 9.767e-41
Identity = 92/189 (48.68%), Postives = 110/189 (58.20%), Query Frame = 2
Query:    5 FFLLTNPS----KMPNPKV----FFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPGGIADCGQL 544
            F LL  PS    K   PKV    +FD  +G +P G +   LF    P+T +NF AL TGEKG G       YK S FHRVI  FM Q            +SIYG +F DENF  KH GPG +SM NAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K   I DCG++
Sbjct:   24 FLLLPGPSVANDKKKGPKVTVKVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.767e-41
Identity = 91/175 (52.00%), Postives = 106/175 (60.57%), Query Frame = 2
Query:   26 SKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG--GIADCGQL 544
            +K  +  V+FD+    +  G I M+L  D+ P+TA+NFR LC   KG G       YKGS+FHR+IPGFM Q             SIYG KF DENF  KHT  GILSM N G  TNGSQFF+   KT+WLD KHVVFG+VVEGMDVV  I K GS SG+  K     I DCG L
Sbjct:    2 AKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 169          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.276e-40
Identity = 89/168 (52.98%), Postives = 105/168 (62.50%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPGGIADCGQL 544
            KV+FD+   GQP G I M L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG+KF DENF  +HT  G+LSM NAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I+ V      R  K   I  CG+L
Sbjct:   36 KVYFDIEHDGQPLGRIVMGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.666e-40
Identity = 89/166 (53.61%), Postives = 104/166 (62.65%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQ 541
            K FFD+  G +  G I  ELF DV P T  NFR LCT +   G       YKGS FHR+IPGFMCQ            +SIYG+KF DENF  KH     LSM NAGP TNGSQFF+ T    WLDGKHVVFG+VV G+DVVK +E +GS+SG+ +K   I DCG+
Sbjct:    4 KAFFDIKAGDERLGRIIFELFNDV-PDTTRNFRELCTHKNNFG-------YKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFS-LSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.176e-40
Identity = 89/176 (50.57%), Postives = 105/176 (59.66%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGK--PLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---GGIADCGQL 544
            M  PK FFD+++GG+P G I  EL+ D+ P+TAENF  LC G  G+ K+    PL YKGS FHRVI  FMCQ            ESIY  KF DENF  KH  P +LSM NAGP TNGSQ F+    T  LDGKHVVFG+V++G  +V+ IE         NKP     I DCG L
Sbjct:    1 MTRPKTFFDISIGGKPQGRIVFELYNDIVPKTAENFLKLCEGNAGMAKTKPDVPLSYKGSIFHRVIKDFMCQFGDFTNFNGTGGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIVRLIEN-QQCDQENNKPLRDVKIDDCGVL 175          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.176e-40
Identity = 91/184 (49.46%), Postives = 113/184 (61.41%), Query Frame = 2
Query:    5 FFLLTNPSKMP--NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPGGIADCGQLS 547
            F  ++  SK P    K++FD+  G +  G I   L+    P+TAENF+ L TG+ G G       YKGS+FHRVI  FM Q            +SIYGS+F DENF  +HT PG+LSM NAGP +NGSQFF+ T  T WLDGKHVVFG+V+EGMDVV  IEK  ++   + N    IADCG LS
Sbjct:   20 FRFVSAESKGPVITDKIYFDIKQGEESLGRIVFGLYGKTVPKTAENFKQLATGQNGYG-------YKGSTFHRVIDQFMIQGGDFTNHDGTGGKSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLLS 196          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.842e-40
Identity = 90/168 (53.57%), Postives = 103/168 (61.31%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG-GIADCGQL 544
            KV+FD+  G +  G I M L+ DV P+T ENFRALCTGE G G       YKGS FHRVI  FM Q            ESIYG KF DENF  KHT P  LSM NAG  TNGSQFF+ T  T WLDGKHVVFG+V+EG D+V AIE   + +    K    IAD G++
Sbjct:   33 KVYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKG-------YKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
PPIG_HUMAN4.384e-4150.57Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
PPID_CANGA7.479e-4153.66Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPID_CRYNE9.767e-4150.00Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIB_RAT9.767e-4148.68Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
CYPH_ENCCU9.767e-4152.00Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
PPIB_ARTBE1.276e-4052.98Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPIA_SCHMA1.666e-4053.61Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPID_YEAST2.176e-4050.57Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
PPIB2_RHIOR2.176e-4049.46Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
PPIB_YARLI2.842e-4053.57Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
back to top