FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 89/169 (52.66%), Postives = 105/169 (62.13%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE--KVGSSSGRTNKPGGIADCGQL 544
            KV+FD+  G +P G I M L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KF DENF  KH+  G+LSM NAG  TNGSQFF+ T  T WLDGKHVVFG+V+EG DVV+ IE  K G       +P  IA  G+L
Sbjct:   36 KVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPA-EPIKIAKSGEL 196          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 86/173 (49.71%), Postives = 102/173 (58.96%), Query Frame = 2
Query:    5 FFLLTNPS----KMPNPKV----FFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS 499
            F LL  PS    K   PKV    +FD+ +G +  G +   LF    P+T +NF AL TGEKG G       YK S FHRVI  FM Q            +SIYG +F DENF  KH GPG +SM NAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S
Sbjct:   24 FLLLPGPSVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDS 189          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.194e-38
Identity = 90/186 (48.39%), Postives = 111/186 (59.68%), Query Frame = 2
Query:    5 FFLLTNPSKMPN--PKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---GGIADCGQLS 547
            FF L + ++ P     V+FD+  G +  G + + LF    P+TAENFRAL TGEKG G       Y+GS FHRVIP FM Q            +SIYGS+F DENF   H  PG+LSM NAGP +NGSQFF+ T KT WLDG HVVFG+V+ G D+VK I K  + +   +KP     I   GQLS
Sbjct:   13 FFGLISANRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFG-------YEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISK--AETDNRDKPLEDVKIIKSGQLS 189          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.194e-38
Identity = 87/172 (50.58%), Postives = 106/172 (61.63%), Query Frame = 2
Query:   14 LTNPSKMPNPK----VFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            L N S+   PK    V+FD+  G +  G I + L+    P TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG+KF DENF  +HT  G+LSM NAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I+ V    GR ++P
Sbjct:   21 LVNASEPRGPKITNKVYFDIQHGDESLGRIVLGLYGKTVPETAENFRALATGEKGFG-------YEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNV--PKGRNDRP 183          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.474e-38
Identity = 81/153 (52.94%), Postives = 96/153 (62.75%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG 502
            KVFFDM +GG+P G I + LF +V P+T +NF  L    +G G       Y GS FHRVI  FM Q             SIYG +F DENF  +H GPG LSM NAG  TNGSQFF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G
Sbjct:   27 KVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAG 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.926e-38
Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPGGIADCGQL 544
            KVFFD+ V  QP G I + LF    P+T ENF+ L  G     K G+   YKGS+FHRVI  FM Q             SIYG +F DENF  KH G G LSM NAGP TNG+QFF+ T +  WLDGKHVVFG+VVEGM VV+ IE + + S  R  K   IA+CG +
Sbjct:   33 KVFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQLSIGTTL--KDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.926e-38
Identity = 80/152 (52.63%), Postives = 98/152 (64.47%), Query Frame = 2
Query:   47 VFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG 502
            V+FD+  G +P G + + L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KF DENF  +HT  G+LSM NAG  TNGSQFF+ T  T WLDG+HVVFG+V+EG +VV+AIE V    G
Sbjct:   22 VYFDIEHGNKPLGRVVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPG 166          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 82/164 (50.00%), Postives = 96/164 (58.54%), Query Frame = 2
Query:   47 VFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCG 538
            VFFD+  GG     I  +L+ DV P+TA NFR L TG +G G       YKGS FHRVI  FM Q            +SIYG KFADENF  KHT P +LSM NAGP TNGSQFF+      WLDGKHVVFG+VV+G D ++  +K  S  G+      I D G
Sbjct:    4 VFFDVQFGGDAPKKIVFKLYDDVVPKTAANFRELATGSRGFG-------YKGSVFHRVITDFMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.724e-37
Identity = 81/171 (47.37%), Postives = 109/171 (63.74%), Query Frame = 2
Query:   41 PKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSK-FADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK--VGSSSGRTNKPGGIADCGQL 544
            P VF D+ + G+  G I + LF+ + P+TAENFR  CTGE  +G + KP+ YK S+FHR+I GFM Q             +I+ S+ F DENF  KH  PG+LSM NAG  +NG QFF+ T   ++LDGKHVVFG+V+EG D+VK IE   VG++S R      I +CG++
Sbjct:    5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS-RPKSNVAIVECGEM 173          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 81/153 (52.94%), Postives = 93/153 (60.78%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG 502
            KV+FDM +GG+P G I + LF    P+TA NF  L    KG G       Y GS FHRVI  FM Q             SIYG KFADENF  KH G G LSM NAG  TNGSQFF+ T KT WLDG+HVVFG+++EGMDVV+ IE+     G
Sbjct:   30 KVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPG 175          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
PPIB_NEUCR9.142e-3952.66Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_MOUSE9.142e-3949.71Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIB_SCHPO1.194e-3848.39Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_EMENI1.194e-3850.58Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CYP6_CAEEL3.474e-3852.94Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIB_SCHJA5.926e-3851.19Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_ASPOR5.926e-3852.63Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIA_PARPR7.739e-3850.00Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPIH_SCHPO1.724e-3747.37Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
CYP5_CAEEL6.552e-3752.94Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
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