FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.460e-36
Identity = 83/177 (46.89%), Postives = 105/177 (59.32%), Query Frame = 2
Query:   23 PSKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---GGIADCGQL 544
            P    N + FFD+++ G+PAG I   L+    PRT ENFRA CTGE G   +G    Y+GS FHRVI GFM Q             SIYG  F DEN   KH  P +LSM N GP TNGSQFF+ + +   LDGKH VFG+V++G++VVKAIE +   +G  +KP     I  CG++
Sbjct:    3 PEVRGNKRAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELG-KMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENL--ETGNEDKPVCKVEITHCGEM 176          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.906e-36
Identity = 78/171 (45.61%), Postives = 105/171 (61.40%), Query Frame = 2
Query:   41 PKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPGGIADCGQLS 547
            P+  FD+ +  +P G I  +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q            ESIYG  F DENF+ KH    +LSM N G  TNGSQFF+ T     LDG HVVFG V+ G +V++ IE + + ++ R      + DCG L+
Sbjct:    7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.906e-36
Identity = 78/171 (45.61%), Postives = 105/171 (61.40%), Query Frame = 2
Query:   41 PKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPGGIADCGQLS 547
            P+  FD+ +  +P G I  +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q            ESIYG  F DENF+ KH    +LSM N G  TNGSQFF+ T     LDG HVVFG V+ G +V++ IE + + ++ R      + DCG L+
Sbjct:    7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.490e-36
Identity = 80/146 (54.79%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 481
            KVFFD+ +G +  G I + LF  V P+T ENF AL TGEKG G       YKGS FHRVI  FM Q             SIYG  F DENF  KH G G +SM NAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:   39 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.247e-36
Identity = 80/146 (54.79%), Postives = 92/146 (63.01%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 481
            KVFFD+ +G +  G I + LF +V P+T ENF AL TGEKG G       YKGS FHRVI  FM Q             SIYG  F DENF  KH G G +SM NAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:   39 KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 80/146 (54.79%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 481
            KVFFD+ +G +  G I + LF  V P+T ENF AL TGEKG G       YKGS FHRVI  FM Q             SIYG  F DENF  KH G G +SM NAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:   39 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.753e-35
Identity = 78/163 (47.85%), Postives = 99/163 (60.74%), Query Frame = 2
Query:   50 FFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCG 538
            +F +++ G+   TI  ELF +V P+T +NF +LC G +   K G+ L YKGS FHRVI  FM Q            ESIYG KF DENF  KH  P +LSM NAGP TNGSQFF+ T  T  LDGKHVVFG+V++G   V+ IE + + +     P  I +CG
Sbjct:    6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFE---KDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 77/159 (48.43%), Postives = 97/159 (61.01%), Query Frame = 2
Query:   77 PAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG---GIADCGQL 544
            PAG +  ELF+D+ PRT+ENFR LCTGE     +  P  YK S FHR+I  FMCQ             SIYG KF DENF  KH   G+LSM N+GPGTNG QFF+      +LDGKHVVFG+VV+G+  ++ +E V   +G  N+P     I  CG++
Sbjct:    2 PAGRLKCELFSDIVPRTSENFRQLCTGE--FRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENV--PTGANNRPKMAVRITQCGEM 156          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 82/168 (48.81%), Postives = 100/168 (59.52%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV-EGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            K F D+ + G+ AG I +EL  DV P+T +NF         IG   K   YKGS+FHRVI  FM Q             SIYG +F DENF  KH   G++SM NAGP TNGSQFF+ T KTEWLDG+HVVFG++  +    V+AIE +GSS GR +K   I D G L
Sbjct:   24 KAFMDIEIDGESAGRIVLELRGDVVPKTVKNF---------IGLFDK---YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 9.790e-33
Identity = 70/149 (46.98%), Postives = 92/149 (61.74%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 487
            +VF DM +  +P G I ++LF    P+T ENFRALCTGE G+  + K  LHYKG+  HRV+  FM Q             SIYG  F DE FV KH+ P +LSM N GP +N SQFF+ TA     +GKHVVFG+V++G +VV  ++ +
Sbjct:    7 RVFLDMALDEKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CYP8_CAEEL1.460e-3646.89Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
NKTR_MOUSE1.906e-3645.61NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN1.906e-3645.61NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
PPIC_HUMAN2.490e-3654.79Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPIC_MOUSE4.247e-3654.79Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN5.546e-3654.79Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPID_SCHPO2.753e-3547.8540 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPIH_USTMA1.046e-3448.43Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPIA_NEOCA2.330e-3448.81Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
CYP9_CAEBR9.790e-3346.98Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
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