FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPI1_STAAM (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0954 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 58/173 (33.53%), Postives = 76/173 (43.93%), Query Frame = 2
Query:   83 GTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            G +  +LF ++ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  +      G LSM N+GP TNGSQFF+   K                            T WLD KH VFGQ+++G   ++ I    +  G  +KP
Sbjct:   25 GDMTFKLFPNIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI--ANTKVGPQDKP 184          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPI1_STAAC (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain COL) GN=SACOL0957 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 58/173 (33.53%), Postives = 76/173 (43.93%), Query Frame = 2
Query:   83 GTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            G +  +LF ++ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  +      G LSM N+GP TNGSQFF+   K                            T WLD KH VFGQ+++G   ++ I    +  G  +KP
Sbjct:   25 GDMTFKLFPNIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLTDGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI--ANTKVGPQDKP 184          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPI1_STAAB (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0821 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 58/173 (33.53%), Postives = 76/173 (43.93%), Query Frame = 2
Query:   83 GTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            G +  +LF ++ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  +      G LSM N+GP TNGSQFF+   K                            T WLD KH VFGQ+++G   ++ I    +  G  +KP
Sbjct:   25 GDMTFKLFPNIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI--ANTKVGPQDKP 184          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPI1_STAA8 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00891 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 58/173 (33.53%), Postives = 76/173 (43.93%), Query Frame = 2
Query:   83 GTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            G +  +LF ++ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  +      G LSM N+GP TNGSQFF+   K                            T WLD KH VFGQ+++G   ++ I    +  G  +KP
Sbjct:   25 GDMTFKLFPNIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI--ANTKVGPQDKP 184          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPI1_STAA3 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0857 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 58/173 (33.53%), Postives = 76/173 (43.93%), Query Frame = 2
Query:   83 GTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 517
            G +  +LF ++ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  +      G LSM N+GP TNGSQFF+   K                            T WLD KH VFGQ+++G   ++ I    +  G  +KP
Sbjct:   25 GDMTFKLFPNIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI--ANTKVGPQDKP 184          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPR_YEAST (Peptidyl-prolyl cis-trans isomerase CPR4 OS=Saccharomyces cerevisiae GN=CPR4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 50/145 (34.48%), Postives = 68/145 (46.90%), Query Frame = 2
Query:   50 FFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGI--GKSGKPLH---YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAK--TEWLDGKHVVFGQVVEGMD 463
            +FD          +  EL+  V P+T  NF  L  G K +  GK    +H   Y+ +  ++V P    Q             ++YG KF DENF  KH  P  L+M   GP +N S+F + T     E LDGK VVFGQ+  G+D
Sbjct:   55 YFDPVSKSMKEADLTFELYGTVVPKTVNNFAMLAHGVKAVIEGKDPNDIHTYSYRKTKINKVYPNKYIQGGVVAPDVGPF--TVYGPKFDDENFYLKHDRPERLAMAYFGPDSNTSEFIITTKADGNEELDGKSVVFGQITSGLD 197          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIL3_USTMA (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ustilago maydis GN=CYP10 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 49/128 (38.28%), Postives = 63/128 (49.22%), Query Frame = 2
Query:   83 GTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 463
            G I +E+F D TPR AENF   C              Y    +HR I  FM Q            +SI+G  FADE     K    GI++  NAGP TN SQFF+  AK   LDGK+ + G+V++G +
Sbjct:   10 GDIKVEVFCDATPRAAENFLGHCAAGT----------YNDVKWHRNIKSFMIQTGDPTGTGKGG-QSIWGKPFADEIRSSLKFDRRGIVACANAGPDTNKSQFFITYAKQPHLDGKYTIIGKVIDGAE 126          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   80 AGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 448
            AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q            ESIYG+ F DE   + +    G+++M NAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 44/124 (35.48%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   80 AGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 448
            AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q            ES+YG+ F DE   + +    G+++M NAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 2
Query:   80 AGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 448
            AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q            ESIYG  F DE   + +    G+++M NAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
PPI1_STAAM1.202e-1433.53Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAC1.202e-1433.53Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAB1.202e-1433.53Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAA81.202e-1433.53Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAA31.202e-1433.53Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
CYPR_YEAST1.570e-1434.48Peptidyl-prolyl cis-trans isomerase CPR4 OS=Saccha... [more]
PPIL3_USTMA5.967e-1438.28Peptidyl-prolyl cis-trans isomerase-like 3 OS=Usti... [more]
SDC10_MOUSE1.018e-1336.29Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
SDC10_RAT1.329e-1335.48Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]
SDC10_BOVIN2.267e-1336.29Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
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