FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.556e-46
Identity = 92/166 (55.42%), Postives = 111/166 (66.87%), Query Frame = 2
Query:   47 VFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            V+FD+++ G+PAG I  +LF DV P+TA+NFRALCTGE+G G       YKGS FHRVIP FM Q            +SIYG KFADENF  KH+ PG+LSM NAGP TNGSQFF+ T    WLDG HVVFG+V + M++V  IE +GS+SG       I DCG L
Sbjct:    3 VYFDISIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.466e-46
Identity = 93/172 (54.07%), Postives = 114/172 (66.28%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPGGIADCGQL 544
            M NP+VFF++ +GG+  G I  ELFAD  P+TAENFRALCTGEKG  ++G PLH+KGSSFHRVI  FM Q            ESIYG KF DE F   H  P +LSM NAGP TNGSQFF+ T +T  LD KHVVFG+++ G  +V+ IE+  +    R  +P  I DCG+L
Sbjct:    1 MTNPRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.527e-46
Identity = 94/176 (53.41%), Postives = 116/176 (65.91%), Query Frame = 2
Query:   29 KMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGG---IADCGQL 544
            K+  PKVFFD++  G+P G +  EL+ DV P+TAENFRALCTGEKG  +S GK LHYKGS FHR+I  FMCQ            ESIYG KF DENF   H  P +LSM NAG  TNGSQFF+ T  T  L+GKHVVFG+V++G  +V+ +E+     G  +KP     I+DCG+L
Sbjct:    4 KLNRPKVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER--CDKGENDKPVEDWIISDCGEL 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 4.527e-46
Identity = 91/167 (54.49%), Postives = 109/167 (65.27%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            +V+FD+   GQP G +  +L+ D+ P+TAENFRALCTGEKG G       Y GS FHRVIP FM Q            +SIYG KF DENF K H  PG+LSM NAGP TNGSQFF+ T    WLDGKHVVFG+VV+G D+VK +E +GS SG T     +A  G+L
Sbjct:    3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.721e-46
Identity = 92/178 (51.69%), Postives = 116/178 (65.17%), Query Frame = 2
Query:   14 LTNPSKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            +T+ +K PNP VFFD+T+GG+  G I MELF  +TPRTAENFR  CTGE      G+P  YK S FHRVI  FM Q             +IYG+ +F DENF+ KH  PG+LSM N+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+   I  CG++
Sbjct:    5 VTSSAKTPNPVVFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.008e-45
Identity = 95/173 (54.91%), Postives = 109/173 (63.01%), Query Frame = 2
Query:   26 SKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            SK  NP VFFD+   G+P G I MELF+++ PRTAENFRALCTGEKG G       +K S FHRVIP F+CQ            +SIYG KF DENF  KHTGPG+LSM N G  TN SQF +   K E LD KHVVFG V +GMD VK IE  GS  G   +   I +CGQ+
Sbjct: 3059 SKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.317e-45
Identity = 94/173 (54.34%), Postives = 111/173 (64.16%), Query Frame = 2
Query:   26 SKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            SK  NP VFFD+   G+P G I MELF+++ P+TAENFRALCTGEKG G       +K S FHRV+P F+CQ            +SIYG KF DENF  KHTGPG+LSM N G  TN SQFF+   K E LD KHVVFG V +GMD V+ IE  GS  G  ++   I +CGQL
Sbjct: 2888 SKDTNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45
Identity = 94/173 (54.34%), Postives = 109/173 (63.01%), Query Frame = 2
Query:   26 SKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            SK  NP VFFD+    +P G I MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ             SIYG KF DENF  KHTGPG+LSM N G  TN SQFF+   K E LD KHVVFG V +GMD VK IE  GS  G  ++   I +CGQ+
Sbjct:  920 SKETNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.832e-45
Identity = 97/173 (56.07%), Postives = 114/173 (65.90%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPGGIADCGQL 544
            M NP+VFFD+ V G   G I +ELFAD  P+TAENFRALCTGEKGIGK S  PLHYKGS FHR+I GFMCQ            ESIYG+ F DE+F +KH   G+LSM N GP T  SQFF+ T  T  LDGKHVVFG+VV G +VV+ +E +      R      IA+CG+L
Sbjct:    1 MINPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.005e-45
Identity = 89/170 (52.35%), Postives = 115/170 (67.65%), Query Frame = 2
Query:   38 NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            NP VFFD+ +GG+P G + +ELFADVTPRTAENFR  CTGE    + G+P  YKGS FHRVI  FM Q             +IYG+ KF+DENF  +H  PG+LSM N+GP TNG QFF+ T  T +L+GKHVVFGQV++GMD+V+ IE   ++  + N+   I  CG++
Sbjct:   15 NPIVFFDVALGGEPLGRLKLELFADVTPRTAENFRQFCTGESK-NQQGRPQGYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
PPIA2_RHIOR1.556e-4655.42Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPID_YARLI3.466e-4654.07Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPID_DEBHA4.527e-4653.41Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
CYPH_YEAST4.527e-4654.49Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIH_ASPOR7.721e-4651.69Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
RBP2_HUMAN1.008e-4554.91E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
RBP2_MOUSE1.317e-4554.34E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
RBP2_BOVIN3.832e-4554.34E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
CYP11_RHIOR3.832e-4556.07Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
PPIH_EMENI5.005e-4552.35Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
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