FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.536e-45
Identity = 93/173 (53.76%), Postives = 115/173 (66.47%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPGGIADCGQL 544
            M   K F D+++GG+  G I +EL+ DV P+TAENFR LCTGEKG+G  +G PLHYKG+ FHRVI GFM Q            ESIYG KF DENF  KH   G+LSM N+GP TNGSQFF+ T +T  LDGKHVVFG+V +GM VV++IE V        ++   I DCG++
Sbjct:    1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 8.537e-45
Identity = 94/177 (53.11%), Postives = 114/177 (64.41%), Query Frame = 2
Query:   17 TNPSKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            + P+   NP VFFD+ +GG P G I MELFADVTPRTAENFR  CTGE      GKP  YK S FHRVI  FM Q             +IYG+ KFADENFV KH   G+LSM N+GP TNG QFF+ T  T +L+GKHVVFGQVV+GMD+V+ IE   +   + ++   I  CG++
Sbjct:    6 SGPATNTNPIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.115e-44
Identity = 95/181 (52.49%), Postives = 114/181 (62.98%), Query Frame = 2
Query:   23 PSKMP---NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSK-FADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG---GIADCGQL 544
            P+K+P   NP VFFD+T+GG+P G I  ELF DV P+TAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              I+G K F DENF  KH  PG+LSM NAGP TNGSQFF+ T  T +LD KHVVFG+V EGMDVVK +E   +     + P     I+ CG++
Sbjct:    3 PTKLPESGNPLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.484e-44
Identity = 93/177 (52.54%), Postives = 118/177 (66.67%), Query Frame = 2
Query:   23 PSKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG---GIADCGQL 544
            P+    P VFFD+++G  PAG I MELF D+TP+TAENFR LCTGE  I  +  P  YK ++FHRVIP FM Q             SIYG++F DENF  KHTGPG+LSM N+GP TNG QFF+ TA  E+LDGKH VFG+V++G+  V+ IE V   +G  N+P     IA+CG++
Sbjct:    7 PAGHTRPIVFFDISIGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRI--NSVPQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.237e-44
Identity = 89/172 (51.74%), Postives = 115/172 (66.86%), Query Frame = 2
Query:   38 NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG---GIADCGQL 544
            NP VFFD+++GGQ  G + +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSM N+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ IE V   +G  NKP     I+ CG++
Sbjct:   10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.237e-44
Identity = 89/172 (51.74%), Postives = 115/172 (66.86%), Query Frame = 2
Query:   38 NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG---GIADCGQL 544
            NP VFFD+++GGQ  G + +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSM N+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ IE V   +G  NKP     I+ CG++
Sbjct:   10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.237e-44
Identity = 98/177 (55.37%), Postives = 115/177 (64.97%), Query Frame = 2
Query:   17 TNPSKMPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPGGIADCGQL 544
            TNP K+ N KV+FD+  G +  G I + L+ +V P+T ENFRAL TGEKG G       YK S FHRVI  FM Q            +SIYG +FADENF  +HTGPGILSM NAG  TNGSQFF+ T  T WLDG+HVVFG+V+EGMDVV AIE   +  G R   P  IADCG+L
Sbjct:   24 TNP-KVTN-KVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.237e-44
Identity = 97/172 (56.40%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   38 NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPG---GIADCGQL 544
            NP VF ++T GG P GTI +ELFADVTPRTAENFR  CTGE    K G P  YK  +FHRVI  FM Q             SIYGSKF DENF  KH GPG+LSM NAG  TNG QFF+  AKT++LD KHVVFG+V++GM  V+ IE V   +G  NKP     +  CGQL
Sbjct:   16 NPIVFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGE--YKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENV--PTGANNKPKLPIVVVQCGQL 183          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.227e-44
Identity = 97/186 (52.15%), Postives = 116/186 (62.37%), Query Frame = 2
Query:    2 CFFLLTNPSKMPNP----KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPGGIADCGQL 544
            CF L         P    KV+FD+  GG+P G I M L+    P+TAENFRAL TG+   G+      Y+GSSFHR+I  FM Q            +SIYGSKF DENF  KHTGPG+LSM NAG  TNGSQFF+CT KT WLD +HVVFG V+EGMDVV A+E V +S G +  +P  IA  G+L
Sbjct:   28 CFVLSPGVDAAKGPVITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGED-LGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.610e-43
Identity = 89/169 (52.66%), Postives = 107/169 (63.31%), Query Frame = 2
Query:   44 KVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS--SGRTNKPGGIADCGQL 544
            K+FFD+ +GG+ AG I + LF D  P+T ENF+ L TG KG G       Y+GS FHR+IP FM Q             SIYGSKF DE+F  KH GPG+LSM NAGP TNGSQFF+CT  T WLD +HVVFG V+EG+DVVK +E   +S       KP  IA  G+L
Sbjct:   83 KIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYG-------YQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CYP40_ARATH6.536e-4553.76Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPIH_ASPFU8.537e-4553.11Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIH_GIBZE1.115e-4452.49Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIH_CRYNE2.484e-4452.54Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIH_HUMAN4.237e-4451.74Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN4.237e-4451.74Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIB_ORPSP4.237e-4455.37Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
CYP11_CAEEL4.237e-4456.40Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIB_CRYNE7.227e-4452.15Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYPB_VICFA1.610e-4352.66Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
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