FC873125

Overview
NameFC873125
Unique NameFC873125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYA_SOLTU (Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 225
            +++ +  LEFRI H   G+PE+L+  MF     AS EG+ L +S+KLVKLMNG VQY+REA RS+F+I +E  +A
Sbjct: 1045 ESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGISLLVSRKLVKLMNGEVQYLREAGRSTFIISVELAVA 1119          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHY_ADICA (Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDADKTK 252
            +H++H EFRI+H   GI E L+ +M   SQ  + EGL + IS  L++LMNG V+Y  +A    FL+ I+FPLAH+ DA   +
Sbjct: 1037 VHLMHFEFRISHSGQGISEALVEEMTNKSQKWTPEGLAISISCTLIRLMNGDVKYTTDAGNKCFLVTIQFPLAHRDDATSVR 1118          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYD_ARATH (Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 VHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPL 222
            V LEFR+     G+P + + DMF+ S+  S EGLGL + +K++KLMNG VQYIRE ERS FLI+IE P+
Sbjct: 1087 VRLEFRMACAGEGVPPEKVQDMFHSSRWTSPEGLGLSVCRKILKLMNGGVQYIREFERSYFLIVIELPV 1155          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYA1_TOBAC (Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 225
            +++ +  LE RI+H   G+PE+L+  MF     AS EG+ L IS+KLVKLMNG VQY+REA RS+F+I +E  +A
Sbjct: 1045 ESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLLISRKLVKLMNGEVQYLREAGRSTFIISVELAVA 1119          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYB_SORBI (Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   28 FRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFP 219
            FR T+P  G+P  ++ DMF +SQ +++EG+GL   +K++KLM G VQYIRE+ERS FLI++E P
Sbjct: 1104 FRFTYPGEGLPADIVQDMFSNSQWSTQEGVGLSTCRKILKLMGGEVQYIRESERSFFLIVLELP 1167          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYA_SOYBN (Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDA 240
            K++H+V LE  ITH   G+PE L++ MF ++   S EG+ L I  KL+KLMNG V+Y+REA +S+F++  E   AH   A
Sbjct: 1052 KSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLESEEGISLLIRAKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA 1131          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYA_POPTM (Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   25 EFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 231
            + RI H   GIPE L+  M+    GAS EG+ L IS+KLVKLMNG V+Y+REA +SSF+I +E    H+
Sbjct: 1052 KLRIRHLGAGIPEALVDQMYGEDTGASVEGISLVISRKLVKLMNGDVRYMREAGKSSFIISVELAGGHK 1120          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSJ (Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   28 FRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 231
            FR   P  G+P +++ DMF +S+  ++EG+GL I +K++KLM G VQYIRE+ERS F I++E P   Q
Sbjct: 1097 FRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSICRKILKLMGGEVQYIRESERSFFHIVLELPQPQQ 1164          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSI (Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   28 FRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 231
            FR   P  G+P +++ DMF +S+  ++EG+GL I +K++KLM G VQYIRE+ERS F I++E P   Q
Sbjct: 1097 FRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSICRKILKLMGGEVQYIRESERSFFHIVLELPQPQQ 1164          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   16 VHLEFRITHPAPGIPEKLIHDMFYH-SQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEF 216
            +H++FR+THP  G+P  LI DM    ++  ++EG+ L++SQKLV++MNG V Y+RE ++  FLI ++F
Sbjct: 1031 IHIQFRMTHPGQGLPSALIEDMVRGGTRWTTQEGVVLHLSQKLVRMMNGHVHYVREQQKCYFLIDLDF 1098          
The following BLAST results are available for this feature:
BLAST of FC873125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PHYA_SOLTU1.675e-1450.67Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV... [more]
PHY_ADICA3.732e-1445.12Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1... [more]
PHYD_ARATH8.314e-1455.07Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1... [more]
PHYA1_TOBAC8.314e-1450.67Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 ... [more]
PHYB_SORBI2.419e-1353.13Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2[more]
PHYA_SOYBN2.419e-1346.25Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1[more]
PHYA_POPTM4.562e-1252.17Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 ... [more]
PHYB_ORYSJ5.959e-1248.53Phytochrome B OS=Oryza sativa subsp. japonica GN=P... [more]
PHYB_ORYSI5.959e-1248.53Phytochrome B OS=Oryza sativa subsp. indica GN=PHY... [more]
PHYE_IPONI5.044e-1145.59Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AA03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873125 ID=FC873125; Name=FC873125; organism=Citrus clementina; type=EST; length=828bp
AAAAATATACACATTGTTCACCTTGAATTCCGGATCACTCATCCAGCACC
TGGAATCCCTGAAAAGTTAATTCATGATATGTTTTACCATAGCCAGGGTG
CCTCAAGGGAAGGTCTTGGCCTATACATCAGCCAAAAGCTTGTTAAGCTT
ATGAATGGCACTGTGCAGTATATCAGAGAGGCGGAAAGATCATCCTTCCT
TATCCTCATTGAATTTCCTTTGGCCCACCAAAAAGATGCTGATAAAACCA
AATAACCAGCTCAGTTTAATGAGCAAATGAACAAGTTGTGCTGACGCATA
ACATGATGCTGAGAAGTAGCATGTCATTCTGGTGAATGAATGCCTCTTTG
TTCAGTTTTAATCATGGATTTTCTCAAGGTTGGGTGATGCTGGAAATTTA
CCCCCTCGACTTGGCATGGTGGGTTATCTCGGTAAAGCCACTGAAGCAGC
AGTGTGGAGTTGTACTCGGAGATTTTGAAAATGAAGAAACCTGAGTTTCC
AGTGAAGACCTATACAACCTGCATCTTCAACTCAGATAGAATCTTAATCT
TGTCTTTTGTAACATCATTTTTCCACGTACATTGTTTCTCAATGAGAACA
AAGAAAAAGAAAAATCTAATTTGGTCACAGTTTGTAACTCTGGAGTAAGA
CTCTCCCAGCAAGTGTCTCAACAACATAAAGCACATAGCACACTGTACAG
TGAGACTTCATTGATAATCAAACCAGAAGTGTATTGTTCTCCAGCTCTGG
ACCTGGGGATAGTCTGTTGTAACTTCTCTGCATATGAATTAAACGAAGTG
TGACGACCAAAAAAAAAAAAAAAAAAAA
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