FC873127

Overview
NameFC873127
Unique NameFC873127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1067 contig Ccv1_Contig1067:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: NEK8_HUMAN (Serine/threonine-protein kinase Nek8 OS=Homo sapiens GN=NEK8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 65/205 (31.71%), Postives = 110/205 (53.66%), Query Frame = 3
Query:  201 ILGRGGFGKVYKG-RLADGKLVAVKRLKEERTSGGELQF-QTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAV-VGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELITGQRAFDPA 806
            ++GRG FG V+   R AD KLV +K++  E+ +  E Q  Q E +++ +  H N++            ++   Y   G++A  +++R +SL  L+  T     +     L ++H H    I+HRD+K  NILLD+    V +GDFG++K++  K    T  V GT  +I+PE       ++K+D++  G +L EL + +RAF+ A
Sbjct:    9 VVGRGAFGIVHLCLRKADQKLVIIKQIPVEQMTKEERQAAQNECQVLKLLNHPNVIEYYENFLEDKALMIAMEYAPGGTLAEFIQKRCNSL--LEEETILHFFVQILLALHHVHTHL---ILHRDLKTQNILLDKHRMVVKIGDFGISKILSSKSKAYT--VVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA 206          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: LIMK2_RAT (LIM domain kinase 2 OS=Rattus norvegicus GN=Limk2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 71/223 (31.84%), Postives = 105/223 (47.09%), Query Frame = 3
Query:  201 ILGRGGFGKVYK-GRLADGKLVAVKRLK--EERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL-------------------MDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELITGQRAFDP 803
            +LG+G FG+  K    A GK++ +K L   +E T   +  F TEVK++    H N+L   G      +  L+  Y+  G++   LR    ++ P  W  + + A G A G++YLH  C   IIHRD+ + N L+  +   VV DFGL++L                   +   D      V G    +APE L+     E  DVF +GI+L E+I GQ   DP
Sbjct:  336 VLGKGFFGQAIKVTHKATGKVMVMKELIRCDEET---QKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLR----NVDPFPWQQKVRFAKGIASGMAYLHSMC---IIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEII-GQVYADP 547          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: LIMK2_MOUSE (LIM domain kinase 2 OS=Mus musculus GN=Limk2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 71/223 (31.84%), Postives = 105/223 (47.09%), Query Frame = 3
Query:  201 ILGRGGFGKVYK-GRLADGKLVAVKRLK--EERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL-------------------MDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELITGQRAFDP 803
            +LG+G FG+  K    A GK++ +K L   +E T   +  F TEVK++    H N+L   G      +  L+  Y+  G++   LR    S+ P  W  + + A G + G++YLH  C   IIHRD+ + N L+  +   VV DFGL++L                   +   D      V G    +APE L+     E  DVF +GI+L E+I GQ   DP
Sbjct:  336 VLGKGFFGQAIKVTHKATGKVMVMKELIRCDEET---QKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLR----SVDPFPWQQKVRFAKGISSGMAYLHSMC---IIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKATTKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEII-GQVYADP 547          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: EPB1B_XENLA (Ephrin type-B receptor 1-B (Fragment) OS=Xenopus laevis GN=ephb1-B PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 65/213 (30.52%), Postives = 107/213 (50.23%), Query Frame = 3
Query:  195 KNILGRGGFGKVYKGRLADGKL-------VAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHITTAVHG--TVGHIAPEYLSTGRSSEKTDVFGYGIMLLELIT-GQRAF 797
            + ++G G FG+VYKGRL   KL       VA+K LK   +      F +E  I+    H N++ L G  T     +++  +M NG++ S LR+       +      +   G A G+ YL E      +HRD+ A NIL++      V DFGL++ +  D  D   T+++ G   V   APE +   + +  +DV+ YGI++ E+++ G+R +
Sbjct:  540 EEVIGAGEFGEVYKGRL---KLPSKREISVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIRYRKFTSASDVWSYGIVMWEVMSYGERPY 743          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: Y9956_DICDI (Probable serine/threonine-protein kinase DDB_G0268876 OS=Dictyostelium discoideum GN=DDB_G0268876 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 66/221 (29.86%), Postives = 114/221 (51.58%), Query Frame = 3
Query:  129 QLGQLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGKLVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYL-STGRSSEKTDVFGYGIMLLELITGQ 788
            ++  LK  S  +L++  +       +GRG  G V +G+   G  +AVK+  EE     E +F +E  I+S+  H N++   G      +  LV  Y + GS+ S +    +++ PL       +AL  A+G++YLH      IIHRD+K  N+L+D+++   + DFGL++++D +     T   GT  ++A E L      S++ DV+ +  +L E I+ Q
Sbjct:  746 EISVLKYISQSDLELTKE-------IGRGVSGVVKRGKWK-GYEIAVKQFNEEELGFSEREFHSEATIMSVLRHDNIVHCVGGSAQPGKMYLVCDYYSRGSLYSVIT---ANICPLSNARIVHLALQVAKGMNYLHSL---GIIHRDLKPGNLLIDQDWNIRISDFGLSRVVDNR----MTKTVGTPCYMAVEVLKGLTDYSQQADVYSFAFVLWECISRQ 948          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: GBPC_DICDI (Cyclic GMP-binding protein C OS=Dictyostelium discoideum GN=gbpC PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 81/277 (29.24%), Postives = 127/277 (45.85%), Query Frame = 3
Query:   69 RRTRPHEFFFDVPAEDDSELQLGQLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGKLVAVKRLKEERTS------GGEL------------------QFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHI---------APEYLSTGRSSEKTDVFGYGIMLLELITGQRAFD 800
            R +  H    D+ A D S + +  + RF+L E+++      NK + GRG FG VY+       +   K L    T        GE+                  +F+ EV  +S   H N++ + GFC  +    +   Y+  GS+ S L    +S   + W  R +IA   A+G+ +LH H +P +IHRD+K+ NILL+   E   G   +A ++D+  +   TA++G    I          PE L+    SE +DV+ +GI+L EL T    FD
Sbjct:  847 RVSTSHRLKLDILAPDISMVDI-PIPRFNLSEVKI------NKEV-GRGAFGIVYEAEWMSEWIALKKLLLPSSTDTTNLNGNGEVMVYDDPDQLIEDRLRVFREFRHEVYYMSGLNHPNVMKISGFC--IQPLCMALEYVRYGSLYSLL---SNSSIEISWGLRLQIASEIAKGMQHLHSH-NPPVIHRDLKSPNILLNGITE---GQNSVATIIDFGTS---TALYGGAALIRCVDQPLWLGPEVLAGTAYSEPSDVYSFGIILWELYTRAHPFD 1103          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: ROR1_DROME (Tyrosine-protein kinase transmembrane receptor Ror OS=Drosophila melanogaster GN=Ror PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 62/222 (27.93%), Postives = 113/222 (50.90%), Query Frame = 3
Query:  138 QLKRFSLRELQVATDGFSNKNILGRGGFGKVYKGRLADGK----LVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGS----VASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTH-ITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLEL 776
            ++  F+L++++   +       LG G FGKVYKG+L         VA+K LKE  +   +  F+ E+++IS   H+N++ + G         +++ YMANG     + S       SL  L++    +IAL  + G+ YL  H     +HRD+ A N L++E     + DFGL++ +   D + + +     V  +  E +  G+ + ++DV+ +G++L E+
Sbjct:  401 RINHFTLQDVEFLEE-------LGEGAFGKVYKGQLLQPNKTTITVAIKALKENASVKTQQDFKREIELISDLKHQNIVCILGVVLNKEPYCMLFEYMANGDLHEFLISNSPTEGKSLSQLEF---LQIALQISEGMQYLSAH---HYVHRDLAARNCLVNEGLVVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPSESILYGKFTTESDVWSFGVVLWEI 609          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: NEK8_MOUSE (Serine/threonine-protein kinase Nek8 OS=Mus musculus GN=Nek8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 65/205 (31.71%), Postives = 110/205 (53.66%), Query Frame = 3
Query:  201 ILGRGGFGKVYKG-RLADGKLVAVKRLKEERTSGGELQF-QTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAV-VGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELITGQRAFDPA 806
            ++GRG FG V+   R AD KLV +K++  E+ +  E Q  Q E +++ +  H N++            ++   Y   G++A  +++R +SL  L+  T     +     L ++H H    I+HRD+K  NILLD+    V +GDFG++K++  K    T  V GT  +I+PE       ++K+D++  G +L EL + +RAF+ A
Sbjct:    9 VVGRGAFGIVHLCLRKADQKLVILKQIPVEQMTKEERQAAQNECQVLKLLNHPNVIEYYENFLEDKALMIAMEYAPGGTLAEFIQKRCNSL--LEEETILHFFVQILLALHHVHTHL---ILHRDLKTQNILLDKHRMVVKIGDFGISKILSSKSKAYT--VVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA 206          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: MATK_MOUSE (Megakaryocyte-associated tyrosine-protein kinase OS=Mus musculus GN=Matk PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 68/202 (33.66%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  204 LGRGGFGKVYKGRLADGKLVAVKRLKEERTSGGELQFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRSSEKTDVFGYGIMLLELITGQRAFDPAM 809
            +G G FG V +G    G+ VAVK +K + T+     F  E  +++   HRNL+ L G         +V  +++ G++ + LR R  +L  +      + AL  A G+ YL      K++HRD+ A NIL+ E+  A V DFGLAK     +     +    V   APE L  GR S K+DV+ +G++L E+ +  RA  P M
Sbjct:  239 IGEGEFGAVLQGEYL-GQKVAVKNIKCDVTAQA---FLDETAVMTKLQHRNLVRLLGVILH-HGLYIVMEHVSKGNLVNFLRTRGRAL--VSTSQLLQFALHVAEGMEYLESK---KLVHRDLAARNILVSEDLVAKVSDFGLAK----AERKGLDSSRLPVKWTAPEALKNGRFSSKSDVWSFGVLLWEVFSYGRAPYPKM 426          
BLAST of FC873127 vs. ExPASy Swiss-Prot
Match: M3K1_ARATH (Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 64/203 (31.53%), Postives = 97/203 (47.78%), Query Frame = 3
Query:  201 ILGRGGFGKVYKGRLADGKLVAVKR--LKEERTSGGEL--QFQTEVKIISMAVHRNLLGLCGFCTTVTEKLLVYRYMANGSVASRLRERQSSLPPLDWPTRKKIALGSARGLSYLHEHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHITTAVHGTVGHIAPEYLSTGRS---SEKTDVFGYGIMLLELITGQ 788
            +LGRG FG VY+G   DG   AVK   L ++ +   E   Q + E+K++S   H+N++   G     +   +    +  GS+    +  Q     +   TR+ +      GL YLH   D   IHRD+K ANIL+D      + DFGLAK+  + D     +  GT   +APE ++   S       D++  G  +LE+ TGQ
Sbjct:  338 LLGRGSFGSVYEGISGDGDFFAVKEVSLLDQGSQAQECIQQLEGEIKLLSQLQHQNIVRYRGTAKDGSNLYIFLELVTQGSLLKLYQRYQLRDSVVSLYTRQILD-----GLKYLH---DKGFIHRDIKCANILVDANGAVKLADFGLAKVSKFND---IKSCKGTPFWMAPEVINRKDSDGYGSPADIWSLGCTVLEMCTGQ 529          
The following BLAST results are available for this feature:
BLAST of FC873127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NEK8_HUMAN2.236e-1631.71Serine/threonine-protein kinase Nek8 OS=Homo sapie... [more]
LIMK2_RAT2.236e-1631.84LIM domain kinase 2 OS=Rattus norvegicus GN=Limk2 ... [more]
LIMK2_MOUSE2.236e-1631.84LIM domain kinase 2 OS=Mus musculus GN=Limk2 PE=1 ... [more]
EPB1B_XENLA2.236e-1630.52Ephrin type-B receptor 1-B (Fragment) OS=Xenopus l... [more]
Y9956_DICDI2.920e-1629.86Probable serine/threonine-protein kinase DDB_G0268... [more]
GBPC_DICDI2.920e-1629.24Cyclic GMP-binding protein C OS=Dictyostelium disc... [more]
ROR1_DROME3.814e-1627.93Tyrosine-protein kinase transmembrane receptor Ror... [more]
NEK8_MOUSE3.814e-1631.71Serine/threonine-protein kinase Nek8 OS=Mus muscul... [more]
MATK_MOUSE3.814e-1633.66Megakaryocyte-associated tyrosine-protein kinase O... [more]
M3K1_ARATH3.814e-1631.53Mitogen-activated protein kinase kinase kinase 1 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AA05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873127 ID=FC873127; Name=FC873127; organism=Citrus clementina; type=EST; length=809bp
TTCCTGTGGGAGTTGCTCTTGGCGCTGCTTTACTTTTTGCTGTACCAGTT
ATTGGGTTTGCATATTGGCGGCGAACAAGACCACACGAATTTTTCTTTGA
CGTACCTGCTGAAGATGATTCAGAACTCCAGTTGGGACAGTTGAAAAGGT
TTTCTTTGCGAGAACTACAAGTTGCTACAGATGGTTTTAGCAACAAGAAC
ATCCTGGGAAGAGGTGGATTTGGCAAGGTGTATAAGGGACGCTTGGCTGA
TGGCAAATTGGTGGCAGTCAAAAGACTTAAGGAAGAGAGGACATCTGGAG
GGGAGTTGCAGTTTCAAACAGAAGTGAAGATAATCAGCATGGCTGTGCAT
CGGAATCTTCTGGGATTATGTGGGTTTTGCACGACTGTCACTGAGAAACT
GCTTGTTTATCGATACATGGCCAATGGAAGTGTTGCATCACGCCTAAGAG
AGCGGCAATCATCACTCCCGCCTCTTGACTGGCCAACTAGGAAGAAAATT
GCTTTAGGTTCAGCGAGGGGCCTTTCATATTTGCACGAGCATTGTGACCC
AAAGATCATTCATCGAGATGTCAAAGCTGCAAACATATTGTTGGATGAAG
AGTTTGAGGCTGTCGTTGGTGACTTTGGTTTAGCTAAACTAATGGACTAC
AAGGACACCCACATAACCACTGCTGTGCATGGCACCGTTGGGCATATAGC
CCCAGAGTATCTCTCCACAGGGAGGTCATCAGAGAAAACGGATGTTTTTG
GTTACGGTATCATGCTGTTAGAGCTAATTACCGGACAAAGGGCATTTGAT
CCTGCTATG
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