FC873134

Overview
NameFC873134
Unique NameFC873134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873134 vs. ExPASy Swiss-Prot
Match: GLGA_METJA (Probable glycogen synthase OS=Methanocaldococcus jannaschii GN=glgA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.822e-19
Identity = 71/269 (26.39%), Postives = 127/269 (47.21%), Query Frame = 2 
Query:  131 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPL-----------------TDKYIGVKYDASTVMDAKPLLK-----------------------EALQAEVGLPVDRNI--PVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLISLHAMRYEXVPIVA 808
            +L+LP       +   G     +G  + +++ GI  +D V TVSP +A+E+ +       +   +      GI+NG+D+ E++P+                    YI   Y A    + KP +K                        A   EV   VD +I  P+IGF+GR   QKG + +  AIP  + K +++ + L  G + +E++L+ L   +  +   +  +++PL+ ++ AG+D+I++PS +EPCGL+ + AM Y   P++A
Sbjct:  139 ILDLPTTLTIHNEAFKGEMIEYKGEVMTFLELGIKYADAVNTVSPSHAEEIKNYP----YIKKYLNNKPFCGILNGIDIDEYDPMKIIERMCNLSNNKLDPRNYAYIS-PYSAEDSHNIKPKIKYSWFYRGGVYEYVEDWNKIDKGISATDVEVHGGVDGDIETPLIGFVGRATHQKGFNTMFEAIPELLEKHDIRFVFLTKGDRDIEERLKNLANEHDGRILALIGYSLPLSSLVFAGSDWIIMPSYWEPCGLVQMEAMAY-CTPVIA 401
The following BLAST results are available for this feature:
BLAST of FC873134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 361
Match NameE-valueIdentityDescription
GLGA_METJA2.822e-1926.39Probable glycogen synthase OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873134 ID=FC873134; Name=FC873134; organism=Citrus clementina; type=EST; length=809bp
GCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAAAG
GGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAATATTGCTTAC
CAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAGCTCA
ATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCTGTGAGAG
GAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGACATGGTC
TTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTGAAGACAA
AGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAGGGAATTG
TGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATATA
GGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGAA
GGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCTG
TCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCTT
GCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCCT
TGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATAC
TGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCG
CATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGA
ACCTTGTGGTCTCATTTCATTACATGCCATGCGTTATGAANCCGTACCTA
TCGTGGCTT
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