FC873137

Overview
NameFC873137
Unique NameFC873137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_PIG (60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_MOUSE (60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_MACFA (60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_HUMAN (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_CHICK (60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_CERNI (60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_BOVIN (60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.641e-38
Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EE++KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.062e-38
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KFLK  K  ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
BLAST of FC873137 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.764e-37
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   37 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 441
            M KFLK  K  ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
The following BLAST results are available for this feature:
BLAST of FC873137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PIG2.083e-3857.3560S ribosomal protein L27 OS=Sus scrofa GN=RPL27 P... [more]
RL27_MOUSE2.083e-3857.3560S ribosomal protein L27 OS=Mus musculus GN=Rpl27... [more]
RL27_MACFA2.083e-3857.3560S ribosomal protein L27 OS=Macaca fascicularis G... [more]
RL27_HUMAN2.083e-3857.3560S ribosomal protein L27 OS=Homo sapiens GN=RPL27... [more]
RL27_CHICK2.083e-3857.3560S ribosomal protein L27 OS=Gallus gallus GN=RPL2... [more]
RL27_CERNI2.083e-3857.3560S ribosomal protein L27 OS=Cervus nippon GN=RPL2... [more]
RL27_BOVIN2.083e-3857.3560S ribosomal protein L27 OS=Bos taurus GN=RPL27 P... [more]
RL27_CANFA4.641e-3856.6260S ribosomal protein L27 OS=Canis familiaris GN=R... [more]
RL27B_YEAST6.062e-3852.9460S ribosomal protein L27-B OS=Saccharomyces cerev... [more]
RL27A_YEAST1.764e-3752.9460S ribosomal protein L27-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873137 ID=FC873137; Name=FC873137; organism=Citrus clementina; type=EST; length=601bp
GAGAGAGCCGCGGGTGCGCGAGGAGCGAGAGTTGAAATGGTGAAGTTTCT
GAAACCAAACAAGGCCGTGATCCTTCTTCAGGGCCGTTACGCCGGCCGGA
AGGCGGTGATCGTGAAGTCGTTCGACGACGGGACCCGCGAGAGGGCGTAC
GGGCACTGTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGGTCATCCG
CAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCACGCGTCAAGGCCTTCG
TCAAGTTGGTCAACTACCAGCACCTGATGCCCACGCGCTACACTCTCGAC
GTCGATTTGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGCAAGGACAA
GAAGGTGACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGTTTA
AGACTGGCAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTTAGATTTTT
AACCAAAGGAAGAAAACGACTTGTGTTTTTGTTTTGTTTTATTTTGTGTT
ATTGAAAACGCTTTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTAGTT
TTTTGTGAACTTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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