FC873141

Overview
NameFC873141
Unique NameFC873141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:90..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.019e-68
Identity = 114/143 (79.72%), Postives = 133/143 (93.01%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RINKEL DL +DPP+SCSAGPV +D+FHWQATIMGP DSP++GGVF ++IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YKTDRA+YE TAR WT+KYA+
Sbjct:    5 RINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.965e-68
Identity = 113/143 (79.02%), Postives = 132/143 (92.31%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RI KEL DL++DPP SCSAGPV DD++HWQA+IMGP+DSP+AGGVF +SIHFP DYPFKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+YKTDR KYE TAR WT+KYA+
Sbjct:    6 RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.965e-68
Identity = 116/143 (81.12%), Postives = 126/143 (88.11%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK DR KY   AR WTQKYAM
Sbjct:    5 RIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.604e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RINKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.604e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RINKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.604e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RINKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.604e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RINKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.604e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RINKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.626e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RI+KEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of FC873141 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.626e-68
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 3 
Query:    3 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 431
            RI+KEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
The following BLAST results are available for this feature:
BLAST of FC873141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC1_COLGL1.019e-6879.72Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_YEAST2.965e-6879.02Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UB2D4_HUMAN2.965e-6881.12Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D3_RAT6.604e-6881.12Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB6.604e-6881.12Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE6.604e-6881.12Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA6.604e-6881.12Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN6.604e-6881.12Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_XENLA8.626e-6881.12Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT8.626e-6881.12Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AC03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873141 ID=FC873141; Name=FC873141; organism=Citrus clementina; type=EST; length=653bp
AACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCT
TGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAAT
TATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCA
TTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGT
ACTAAGGTTTTCCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGA
CATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTC
TGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCACTTGTG
CCTGAGATTGCTCACATGTACAAGACTGACAGAGCCAAATATGAGACTAC
TGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCT
GTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAG
AAATAAGTTTGTTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTA
AGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAATTTAGCATTGTCCT
TCAATACTTAAATTATAATTTACTGCAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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