FC873143

Overview
NameFC873143
Unique NameFC873143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873143_ssr474 microsatellite FC873143_ssr474:474..485. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873143_ssr757 microsatellite FC873143_ssr757:757..768. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14876 contig Ccv1_Contig14876:6..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFPDSTTVATAYEQQQQGES 779
            +YRGVR+RPWG++AAEIRDP + +RVWLGTF+T              FRGP+AK NF  P S   +T++    +  S
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLP-SENQSTSHSSTMESSS 101          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRGVRQRPWGKWAAEIRDP +A RVWLGTF+               FRG +AKLNF
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 36/78 (46.15%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFPDSTTVATAYEQQQQGESSH 785
            Y+G+R+RPWG+WAAEIRDP +  RVWLGTFNT               RG +AKLNF    S       +  QQ E +H
Sbjct:   25 YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENH 102          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFP-DSTTV 743
            ++RGVR+RPWG++AAEIRDP + TRVWLGTF+T              FRG +AK NF  P +STTV
Sbjct:   32 HFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTV 97          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 32/56 (57.14%), Postives = 36/56 (64.29%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRG+RQRPWGKWAAEIRDPR   R+WLGTF T               RG +AK+NF
Sbjct:  125 YRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRG+RQRPWGKWAAEIRDPR+ +R WLGTF+T               RG +AK+NF
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRG+RQRPWGKWAAEIRDP +  RVWLGTF T               RG +AKLNF
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFP 728
            +YRGVR+RPWG++AAEIRDP + +RVWLGTF+T              FRGP+AK NF  P
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSP 85          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSF-PDSTTVATAYEQQQQGESS 782
            YRGVRQRPWGKWAAEIRDP +  R+WLGTF T               RGP A  NF+  P+   V    EQ+Q+ ES+
Sbjct:  117 YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPV---QEQEQEPESN 191          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFP 728
            +RGVRQRPWGKWAAEIRDP +  R+WLGTF T               RGP A  NFS P
Sbjct:  125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIP 183          
The following BLAST results are available for this feature:
BLAST of FC873143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF4_NICSY2.865e-1346.75Ethylene-responsive transcription factor 4 OS=Nico... [more]
ABR1_ARATH2.865e-1362.50Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF73_ARATH4.887e-1346.15Ethylene-responsive transcription factor ERF073 OS... [more]
ERF80_ARATH6.383e-1354.55Ethylene-responsive transcription factor 9 OS=Arab... [more]
RA212_ARATH8.336e-1357.14Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH1.089e-1257.14Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF71_ARATH1.089e-1258.93Ethylene-responsive transcription factor ERF071 OS... [more]
ERF4_TOBAC1.089e-1255.00Ethylene-responsive transcription factor 4 OS=Nico... [more]
CRF4_ARATH1.422e-1250.00Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF3_ARATH1.857e-1255.93Ethylene-responsive transcription factor CRF3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AC06FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873143 ID=FC873143; Name=FC873143; organism=Citrus clementina; type=EST; length=785bp
CTTTCAATTCCAGAGCCAACACGAACACACGAACAACTGAAACATAAGGA
AAAAAAAAAAAAAAAAAAAAAAAGAAATAAGAAAATAAATCGACAACGAA
GATGCAAAGATCCTCAAAGCGACAGAGATTCTGCGCCGTTTCCGCCGCCC
ACAACCCGCAGCCGTCGCCTCCGCCGCGTCGTCTCACCCAAGAGCAAGAA
CTCGCCATCATGGTCGCAGCGCTCGAAAACGTCGTCGTCGGAAACACAGA
CAACGATTTCTCCACCGATATTTTTCGATTTCAAGATTGGACGGCGTCTA
ACGCAGCAGCCATCGCCTCCACGTCCACGAGTTATAATAACCACAACACT
AATTTTGGAAATGCGATGCTACCTCCTGCCGACACGTGTCAAGTGTGCAA
CATTCAAGGATGTTTGGGATGCAATTATTTCCCGCCAAATAATAACCATT
ACCCCCACCAACAACAACAGCCTCAGCAGCAGCAGCACCAACGGCAAAAG
AAAGCAGCAGCTGGTAGCAGCGGCGCGGGAAAGAGGAGAGGGAAGAAGAA
TTACAGAGGGGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCTGAGATTC
GTGACCCGAGGAGGGCGACCCGTGTCTGGCTGGGGACGTTCAACACGGCG
GAGGAGGCAGCGAGGGCGTACGATAAGGCCGCCGTTGAGTTCCGTGGGCC
CAGGGCCAAGCTTAATTTCTCATTTCCCGATAGCACGACGGTGGCAACAG
CATACGAGCAGCAGCAGCAGGGGGAGTCATCGCAT
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