FC873143

Overview
NameFC873143
Unique NameFC873143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873143_ssr474 microsatellite FC873143_ssr474:474..485. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873143_ssr757 microsatellite FC873143_ssr757:757..768. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14876 contig Ccv1_Contig14876:6..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRGVR+RPWG++AAEIRDP + +RVWLGTF++               RGP+AK NF
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF 82
[Close]
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 35/73 (47.95%), Postives = 39/73 (53.42%), Query Frame = 3 
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFPDSTTVATAYEQQQQ 770
            +RGVRQR WGKW AEIR+P R TR+WLGTFNT                G  AKLN   P         +QQQQ
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLNLVHP---------QQQQQ 97
The following BLAST results are available for this feature:
BLAST of FC873143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF83_ARATH7.803e-1153.57Ethylene-responsive transcription factor 7 OS=Arab... [more]
DRE2G_ARATH7.803e-1147.95Dehydration-responsive element-binding protein 2G ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AC06FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873143 ID=FC873143; Name=FC873143; organism=Citrus clementina; type=EST; length=785bp
CTTTCAATTCCAGAGCCAACACGAACACACGAACAACTGAAACATAAGGA
AAAAAAAAAAAAAAAAAAAAAAAGAAATAAGAAAATAAATCGACAACGAA
GATGCAAAGATCCTCAAAGCGACAGAGATTCTGCGCCGTTTCCGCCGCCC
ACAACCCGCAGCCGTCGCCTCCGCCGCGTCGTCTCACCCAAGAGCAAGAA
CTCGCCATCATGGTCGCAGCGCTCGAAAACGTCGTCGTCGGAAACACAGA
CAACGATTTCTCCACCGATATTTTTCGATTTCAAGATTGGACGGCGTCTA
ACGCAGCAGCCATCGCCTCCACGTCCACGAGTTATAATAACCACAACACT
AATTTTGGAAATGCGATGCTACCTCCTGCCGACACGTGTCAAGTGTGCAA
CATTCAAGGATGTTTGGGATGCAATTATTTCCCGCCAAATAATAACCATT
ACCCCCACCAACAACAACAGCCTCAGCAGCAGCAGCACCAACGGCAAAAG
AAAGCAGCAGCTGGTAGCAGCGGCGCGGGAAAGAGGAGAGGGAAGAAGAA
TTACAGAGGGGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCTGAGATTC
GTGACCCGAGGAGGGCGACCCGTGTCTGGCTGGGGACGTTCAACACGGCG
GAGGAGGCAGCGAGGGCGTACGATAAGGCCGCCGTTGAGTTCCGTGGGCC
CAGGGCCAAGCTTAATTTCTCATTTCCCGATAGCACGACGGTGGCAACAG
CATACGAGCAGCAGCAGCAGGGGGAGTCATCGCAT
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