FC873151

Overview
NameFC873151
Unique NameFC873151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1189 contig Ccv1_Contig1189:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP2_FRASC (ATP-dependent Clp protease proteolytic subunit 2 OS=Frankia sp. (strain CcI3) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 62/125 (49.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  433 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            +D  + LL++RI+FLG Q+DD++A+ +++QLLFL++ED  +DI ++INSPGGS T+   IYD M+  + D+STIC+G AAS  A LLAAG+ GKR+ + N+R++IHQP     G+++D+ I+ RE
Sbjct:   33 MDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDIEIQARE 157          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP1_SALRD (ATP-dependent Clp protease proteolytic subunit 1 OS=Salinibacter ruber (strain DSM 13855) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 59/124 (47.58%), Postives = 95/124 (76.61%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL++RI+F+G+ ++D  A+  ++QLL+L++E S + I ++INSPGG + +G+G+YD M+  +A +ST C+GLAASMG+ LLA G  G+R C+PN+RVM+HQP+G   G+A+D+ I+ +E
Sbjct:   37 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPINIYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVMMHQPMGGTEGQASDIEIQAKE 160          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP1_BIFLO (ATP-dependent Clp protease proteolytic subunit 1 OS=Bifidobacterium longum GN=clpP1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 71/135 (52.59%), Postives = 96/135 (71.11%), Query Frame = 1
Query:  406 SPYLPKFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAG-GKATDMSIRIRE 807
            +PY  K +  D  + L   RIIFLG QVDD +AD +++QLL L+++D  +D+ ++INSPGGS+TA   IYD M+  K DV T+CLG AAS  A LLA+G+KGKR  +PNARV+IHQP    G GKAT++ I+ +E
Sbjct:   49 TPYGMKTQ--DAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKE 181          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_LACBA (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.461e-31
Identity = 67/124 (54.03%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL+ RII L   ++D  A+ II+QLLFLDA+DS KDI L+INSPGG V++G+ IYD M   ++DV TI LG+AASM + L ++G+KGKR+ +P+A+VMIHQP G A G+ T++ I  RE
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSTKDISLYINSPGGVVSSGLAIYDTMNFIQSDVQTITLGMAASMASVLASSGTKGKRFALPHAQVMIHQPSGGAQGQQTEIEIAARE 142          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_BARQU (ATP-dependent Clp protease proteolytic subunit OS=Bartonella quintana GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.214e-31
Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDM 789
            D  + LL++RIIF+   V+D  A  + +QLLFL+AE+ KK+I L+INSPGG VT+GM IYD M+  +  VST+C+G AASMG+ LL AG+KG R+ +PNAR+M+HQP G   G+A+D+
Sbjct:   27 DIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMVHQPSGGFQGQASDI 144          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_STRP7 (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae (strain 70585) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.198e-31
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSI 795
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDSMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAI 138          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_LACRJ (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus reuteri (strain JCM 1112) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.198e-31
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL+ RII L   ++D  A+ I++QLLFLDA+DS KDI L+INSPGG VT+GM IYD M   KADV TI +G+AASM + L+++G+KGKR+ +P+++V+IHQP G A G+ T++ I   E
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATE 142          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_LACRD (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus reuteri (strain DSM 20016) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.198e-31
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL+ RII L   ++D  A+ I++QLLFLDA+DS KDI L+INSPGG VT+GM IYD M   KADV TI +G+AASM + L+++G+KGKR+ +P+++V+IHQP G A G+ T++ I   E
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATE 142          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_LACPL (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus plantarum GN=clpP PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.198e-31
Identity = 66/124 (53.23%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL+ RII L   ++D  A+ II+QLLFLDA+DS KDI L+INSPGG VTAG+ IYD M   K+DV TI +G+AASM + L ++G+KGKR+ +PN+ ++IHQP G A G+ T++ I   E
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDNMANAIIAQLLFLDAQDSGKDIYLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPNSEILIHQPSGGAQGQQTEIEIVAEE 142          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_LACCB (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus casei (strain BL23) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.198e-31
Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL+ RII L  +V+D  A+ +I+QLLFLDA+DS+KDI L+INSPGG +T+G+ + D M   K+DV TI +G+AASM + LLA G+KGKR+ +PN+ ++IHQP G A G+ T++ I   E
Sbjct:   18 DIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILIHQPSGGAQGQQTEIEIAAEE 141          
The following BLAST results are available for this feature:
BLAST of FC873151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_FRASC1.884e-3149.60ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SALRD1.884e-3147.58ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BIFLO1.884e-3152.59ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_LACBA2.461e-3154.03ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BARQU3.214e-3154.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STRP74.198e-3154.92ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACRJ4.198e-3153.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACRD4.198e-3153.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACPL4.198e-3153.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACCB4.198e-3151.61ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873151 ID=FC873151; Name=FC873151; organism=Citrus clementina; type=EST; length=809bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGAT
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