FC873151

Overview
NameFC873151
Unique NameFC873151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1189 contig Ccv1_Contig1189:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 80/123 (65.04%), Postives = 99/123 (80.49%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIR 804
            D  + LL+ RII LGS +DD  A+ I+SQLLFL A+D++KDI L+INSPGGSVTAGM IYD M+  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I  R
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAR 141          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 78/120 (65.00%), Postives = 98/120 (81.67%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 795
            D  + LL+ RII LGS +DD  A+ I+SQLLFL AED +KDI L+INSPGGS+TAG+ IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG A G+AT++ I
Sbjct:   19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LLR RIIFLG+QVDD  A+ I++Q+L+L++ED +KDI L+INSPGGSV AGM IYD M+  + DVSTIC+GLAASMGAFLLA G+KGKR  +P+AR+MIHQPLG A G ATD+ I+ +E
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKE 140          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LLR RIIFLG+QVDD  A+ I++Q+L+L++ED +KDI L+INSPGGSV AGM IYD M+  + DVSTIC+GLAASMGAFLLA G+KGKR  +P+AR+MIHQPLG A G ATD+ I+ +E
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKE 140          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP2_BURXL (ATP-dependent Clp protease proteolytic subunit 2 OS=Burkholderia xenovorans (strain LB400) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 76/124 (61.29%), Postives = 103/124 (83.06%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL++RI+FL  +V+D TA+ +++Q+LFL++E+  KDI  +INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLAAG+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE
Sbjct:   42 DIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQARE 165          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNY3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 77/124 (62.10%), Postives = 102/124 (82.26%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LLR+RI+FLG +V D  A+ +++QLLFL+AED +KDI L+INSPGGSV+AG+GI+D M   + DV TIC+GLAASMGAFLL+AG+KGKR  +PN+R+MIHQPLG A G+ATD+ I+ +E
Sbjct:   17 DIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEIQAKE 140          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LLR+RIIFLG+ VDD  AD +++Q+LFL+AED +KDI+++INSPGGSVTAG+ IYD M+    DV TIC GLAASMGAFLL+ G+KGKR  +PNAR+MIHQPLG A G+A D+ I+ +E
Sbjct:   24 DIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKE 147          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_SODGM (ATP-dependent Clp protease proteolytic subunit OS=Sodalis glossinidius (strain morsitans) GN=clpP PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 77/124 (62.10%), Postives = 100/124 (80.65%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL++RIIF+  QV+D  A+ I++Q++FL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVST C+G AASMGAFLLAAG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE
Sbjct:   19 DIFSRLLKERIIFMTGQVEDHMANLIVAQMMFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLAAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHARE 142          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_RALSO (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia solanacearum GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 74/124 (59.68%), Postives = 104/124 (83.87%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL++R+IF+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AG+ +YD M+  K DVST+C+G+AASMGAFLLAAG+KGKRY +PN+R+MIHQPLG A G+A+D+ I+ RE
Sbjct:   41 DIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQARE 164          
BLAST of FC873151 vs. ExPASy Swiss-Prot
Match: CLPP_BURVG (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 75/124 (60.48%), Postives = 104/124 (83.87%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE 807
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQARE 165          
The following BLAST results are available for this feature:
BLAST of FC873151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_MACCJ3.206e-3965.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW3.206e-3965.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB3.206e-3964.52ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA3.206e-3964.52ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BURXL3.206e-3961.29ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNY33.206e-3962.10ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNSC3.206e-3962.90ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SODGM4.188e-3962.10ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RALSO4.188e-3959.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURVG4.188e-3960.48ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873151 ID=FC873151; Name=FC873151; organism=Citrus clementina; type=EST; length=809bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGAT
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