FC873153

Overview
NameFC873153
Unique NameFC873153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873153_ssr123 microsatellite FC873153_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1190 contig Ccv1_Contig1190:1..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.278e-40
Identity = 96/210 (45.71%), Postives = 125/210 (59.52%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLNLM----------GSSNDNKHCEENDAMAS------------------TTTP------ATKAQVVGWPPVRAYRKNAMKGSCK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNV---NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSS 660
            ++  KRGF ET+DL L           G     +  E+ DA A+                  T  P      A KAQVVGWPPVR++RKN +   CK    VKV+++GAPYLRK+D+ +Y SY EL  A ++MF+  TI    + +++ ++    + +EYVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+ K SEAIGLAPR   K  S
Sbjct:   24 RSSGKRGFAETIDLKLKLQPAAPAAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.477e-39
Identity = 97/211 (45.97%), Postives = 121/211 (57.35%), Query Frame = 1
Query:  163 KRGFLETVDLNLM----------------GSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM--------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            KRGF ET+DL L                  ++   K   E  A  +   PA KAQ VGWPPVR++R+N M                            S  FVKV+++GAPYLRKVDL++Y+SY++L  AL+ MF +F    N++NE      VNG + V TYEDKDGDWMLVGDVPW+MFVESCKR+R+ K SEAIGLAPR   K  +KS
Sbjct:   32 KRGFEETIDLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.477e-39
Identity = 97/211 (45.97%), Postives = 121/211 (57.35%), Query Frame = 1
Query:  163 KRGFLETVDLNLM----------------GSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM--------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            KRGF ET+DL L                  ++   K   E  A  +   PA KAQ VGWPPVR++R+N M                            S  FVKV+++GAPYLRKVDL++Y+SY++L  AL+ MF +F    N++NE      VNG + V TYEDKDGDWMLVGDVPW+MFVESCKR+R+ K SEAIGLAPR   K  +KS
Sbjct:   32 KRGFEETIDLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.519e-39
Identity = 94/215 (43.72%), Postives = 127/215 (59.07%), Query Frame = 1
Query:  154 AGTKRGFLETVD--------------LNLMGS---SNDNKHCEENDAMAS---TTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSK 663
            +G KRGF +T D              +N+M S    + +K  +E  + A       PA KAQVVGWPP+R+YRKN M  S                 FVKV+++GAPYLRKVDL  Y SYQ+L SALE MFS  T+          R  ++E K+ D ++G E+V TYEDKDGDWMLVGDVPW++F E+C+++++ K S++IGLAP    K+ +K
Sbjct:  104 SGNKRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.612e-39
Identity = 86/164 (52.44%), Postives = 106/164 (64.63%), Query Frame = 1
Query:  247 ASTTTPATKAQVVGWPPVRAYRKNAM--------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN--------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAI--GLAPRTPAKNSSKS 666
            A    P  K QVVGWPPVR++RKN +                +  FVKV+++GAPYLRKVDL++Y SY+EL  +L  MFS  T  N         +NE K+ D +N  +YVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+ K  EAI  GLAPR  AK  ++S
Sbjct:   80 ADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.132e-38
Identity = 81/162 (50.00%), Postives = 108/162 (66.67%), Query Frame = 1
Query:  250 STTTPATKAQVVGWPPVRAYRKNAMKGSCK--------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSK 663
            S++ PA KAQ+VGWPPVR+YRKN +  +CK              FVKV+++GAPYLRKVDL  Y +Y EL SALE MF+  T+          ++ ++E K+ D +NG +YV TYEDKDGDWMLVGDVPW+MF++ CK++++ K  +AIGLA    A   SK
Sbjct:  174 SSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSK 335          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.860e-37
Identity = 87/173 (50.29%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  136 ECHRTKAGTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMK--------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            E   T    KR   E  D   + + +D    E+N        P  KAQVVGWPP+R+YRKN ++        G+  +VKV++ GAPYLRK+DL++Y SY ELL ALE+MF    I    +ER   +  NG EY PTYEDKDGDWMLVGDVPW MFV SCKR+R+ K SEA GL
Sbjct:   30 EKRATARSNKRSSPEASDEESISNGSDVTK-EDN------VVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFK--CIFGEYSER---EGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.959e-37
Identity = 82/172 (47.67%), Postives = 113/172 (65.70%), Query Frame = 1
Query:  202 GSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM-----KGSCK-----------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            G  +++   E+    A+   PA KAQVVGWPP+R+YRKN M     K S +           +VKV+++GAPYLRKVDL+ Y +Y++L +ALE MF  F T ++ ++E +        EYV TYEDKDGDWMLVGDVPW+MF  SC+R+R+ K S+AIGLAPR   K+ +++
Sbjct:   91 GEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.170e-36
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = 1
Query:  142 HRTKAGTKRGFLETVD--LNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMK---GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            H      KR   ET    +++  +S+  +H E      + + P  KA++VGWPP+R+YRKN+++   G   FVKV+++GAPYLRKVDL++Y  Y ELL ALE MF        + E    +   G EY PTYEDKDGDWMLVGDVPW MFV SCKR+R+ K SEA GL
Sbjct:   36 HAVLRNNKRQVRETSQDSVSISKASHHQQHVE------TVSAPPPKAKIVGWPPIRSYRKNSVQEGEGDGIFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFKLA-----IGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.446e-36
Identity = 83/163 (50.92%), Postives = 109/163 (66.87%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            K   KR   +T + ++  S   N   +E+   +S+  P  KA++VGWPP+R+YRKN++  +     FVKV+++GAPYLRK+DL +Y  Y ELL ALE MF  LTI  + +ER   +   G EY PTYEDKDGDWMLVGDVPW MFV SCKR+R+ K +EA GL
Sbjct:   31 KNNNKRQLPQTSEESVSISKVTN---DEHIVESSSAAPPAKAKIVGWPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK-LTIGEY-SER---EGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
The following BLAST results are available for this feature:
BLAST of FC873153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA11_ORYSJ2.278e-4045.71Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA13_ORYSJ1.477e-3945.97Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI1.477e-3945.97Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA8_ARATH2.519e-3943.72Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
AUX28_SOYBN5.612e-3952.44Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA9_ARATH2.132e-3850.00Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
AX22D_PHAAU6.860e-3750.29Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA17_ORYSJ8.959e-3747.67Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
AX22B_PHAAU1.170e-3648.81Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA4_PEA4.446e-3650.92Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873153 ID=FC873153; Name=FC873153; organism=Citrus clementina; type=EST; length=821bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACGATCCGATTTTGATCAGTT
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