FC873153

Overview
NameFC873153
Unique NameFC873153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873153_ssr123 microsatellite FC873153_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1190 contig Ccv1_Contig1190:1..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.639e-15
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  139 CHRTKAGTKRGFLETVDLNLMGSSNDNKHCEENDAM---ASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNV--NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSE 618
            C       KR  L + DL L  + +   H + N+     +S TT    A   G       R++       FVKV +EG P  RK+DL     Y+ L++ L  MF      +H + +  +  +  N V +V TYED++GDWM+ GDVPW++F+ S KR+R+ ++ +
Sbjct:   41 CRPPATAAKRRSLISTDLRLGLTLSSVVHIDGNNPSTPRSSLTTATVTADRGGGGGGHGRRRSL------FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.639e-15
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  256 TTPATKAQVVGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTK 609
            +TP        WPP++ + ++A++ +              FVKV +EG P  RK+DL +   Y  LL  L  MF   T   + +  +    V G +  +V TYED+DGDWM+VGDVPW++F+ S K++R+ +
Sbjct:   70 STPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.639e-15
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  256 TTPATKAQVVGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTK 609
            +TP        WPP++ + ++A++ +              FVKV +EG P  RK+DL +   Y  LL  L  MF   T   + +  +    V G +  +V TYED+DGDWM+VGDVPW++F+ S K++R+ +
Sbjct:   70 STPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.066e-13
Identity = 53/136 (38.97%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  265 ATKAQVVGWPPVRAYRKNA--------------MK------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 567
            A+ AQ+VGWPPVR +RKN               MK                   S  FVKV +EG    RK+DL+ + SY  L  AL+ MF  FL+  I    NE + ++  +   YV  YED +GD MLVGDVPW
Sbjct:   36 ASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPW 171          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  340 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSS 615
            +VKV +EG P  RK+DL   + Y++L+  L+ MF+   +          D  N   +V TY DK+GDWM+VGDVPW+MF+ + +R+++++++
Sbjct:   86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEE-----DMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of FC873153 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  340 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKS 612
            +VKV +EG P  RK+DL   + Y +L++ L+ MF+   +          D  +   +V TY DK+GDWM+VGDVPW+MF+ S +R++++++
Sbjct:   84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEE-----DMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169          
The following BLAST results are available for this feature:
BLAST of FC873153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA8_ORYSJ9.639e-1532.12Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA4_ORYSJ9.639e-1534.85Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI9.639e-1534.85Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA22_ORYSJ1.066e-1338.97Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA20_ARATH9.021e-1338.04Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA30_ARATH2.010e-1238.46Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873153 ID=FC873153; Name=FC873153; organism=Citrus clementina; type=EST; length=821bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACGATCCGATTTTGATCAGTT
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