FC873168

Overview
NameFC873168
Unique NameFC873168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 175
            FDPL LA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
[Close]
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 175
            FDPL LA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
The following BLAST results are available for this feature:
BLAST of FC873168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB4A_ARATH1.318e-1260.34Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH8.545e-1258.62Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2DB02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873168 ID=FC873168; Name=FC873168; organism=Citrus clementina; type=EST; length=459bp
CTTTGATCCATTGGTTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGC
CGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCA
ACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAA
ATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCA
AAACATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGT
ATTTTCATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCT
TACAGGTTGTGCCAGAATCTAGTTACAAGTTTACATCAAAAAAAAAAAAA
AAAAAAAAA
back to top