FC873231

Overview
NameFC873231
Unique NameFC873231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.445e-54
Identity = 98/147 (66.67%), Postives = 112/147 (76.19%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH IE VPE+PLVV D  E  +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.445e-54
Identity = 95/147 (64.63%), Postives = 115/147 (78.23%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V +P V +A IRPDIV FVH+N+ +N+ QPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT
Sbjct:   22 SGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKT 168          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.069e-53
Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + S V LP V +A IRPDIV FVH  + +N  QPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMF PTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS ES++KT
Sbjct:   17 SESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKT 163          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 5.097e-52
Identity = 93/147 (63.27%), Postives = 114/147 (77.55%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +S T+ LP V KA IRPD+V  VH+ +++N  QPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMF PTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT
Sbjct:   18 SSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.695e-52
Identity = 93/147 (63.27%), Postives = 114/147 (77.55%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +S T+ LP V KA IRPD+V  VH+ +++N  QPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMF PTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT
Sbjct:   18 SSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 4.039e-49
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 1
Query:   19 SSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            ++ +PLP V  A IRPDIV  V +++++N  Q YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMF PTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT
Sbjct:   17 ANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKT 162          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 193.741 bits (491), Expect = 4.039e-49
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 1
Query:   19 SSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            ++ +PLP V  A IRPDIV  V +++++N  Q YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMF PTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT
Sbjct:   17 ANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKT 162          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 5.275e-49
Identity = 92/141 (65.25%), Postives = 107/141 (75.89%), Query Frame = 1
Query:   34 LPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            LP V KA IRPD+V  VH  + +N+ Q YAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK +RRWHRK+NVNQ+RY           P+LV ++GH I+ V E PLVVSD  + V+KT
Sbjct:   27 LPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKT 167          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 7.617e-48
Identity = 87/144 (60.42%), Postives = 112/144 (77.78%), Query Frame = 1
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAESVEKT 456
            V LP+V+   IRPD+V FVH+N+++N+ Q Y  +  AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFGNMCRGGRM+ P K WRRW+RK+NVNQKRY           P+LVMARGH+I  + E+PLV+ ++S ++++KT
Sbjct:   20 VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKT 163          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.100e-46
Identity = 89/144 (61.81%), Postives = 108/144 (75.00%), Query Frame = 1
Query:   25 TVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            T  LP V  A IR D+V FVH+N+++NS QPYAV+R +G + S ESWGTGRAV+RIPR+ GGGT  +G GAFGNMCRGGRMF PTKI+RRWHRKIN++QKR+           P+LVM+RGHKIE V E+PLVV D   + EKT
Sbjct:   20 TCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKT 163          
The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL4_MACFA2.445e-5466.6760S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4A_XENLA2.445e-5464.6360S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_URECA2.069e-5365.3160S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4A_SCHPO5.097e-5263.2760S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4B_SCHPO8.695e-5263.2760S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST4.039e-4962.3360S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST4.039e-4962.3360S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_DROME5.275e-4965.2560S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4_DICDI7.617e-4860.4260S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_TRYBB1.100e-4661.8160S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bp
GACATGGTGACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAA
GGCCTCTATCCGACCCGACATCGTGGGATTTGTCCACTCTAACATCTCCC
AGAACAGTCCCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACC
TCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGT
CCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGT
GTCGCGGTGGTCGCATGTTCACTCCCACAAAGATCTGGCGCCGATGGCAC
CGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGC
CGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGA
CTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAG
AAAACCATCAGCTGCCCTTAAAAGTCCTGAAGCAGATCGGTGCCTATGCT
GACGCCGAAAAG
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