FC873231
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3) HSP 1 Score: 179.874 bits (455), Expect = 6.035e-45 Identity = 85/145 (58.62%), Postives = 103/145 (71.03%), Query Frame = 1 Query: 22 STVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 S + LP V + IRPD+V F+ + +N Q +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MF P K++RRWHR +N+ QKRY P+L+ ARGH I+ V E+PLVVSD ES KT Sbjct: 19 SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKT 163
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22 Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 133 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV 423 KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK +R+ P+LV ARGH I VP++P V Sbjct: 3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSV 99
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.830e-17 Identity = 47/148 (31.76%), Postives = 74/148 (50.00%), Query Frame = 1 Query: 13 DASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 +A + LP++ RPD++ + QP+ AG +TSA+S+G GR V+ +PR+ G + AF GGR P + + +H +IN ++R LV ARGH+IE VP++PLVV D +++T Sbjct: 11 EAIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRT 153
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16 Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 1 Query: 4 MVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 M + + LP + RPD++ + QP+ +AG +TSA+ WG+GR +R+PR+ G + AF M GGR PT+ + H KIN+ ++R+ LV RGH++ + ++P++V D SV+ T Sbjct: 8 MEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTT 153
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.642e-16 Identity = 47/143 (32.87%), Postives = 68/143 (47.55%), Query Frame = 1 Query: 25 TVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 453 TV LP + +R D++ N QPY +AG +TSAESWG G V+ +PRV G AG+ A GG+ + W +++N ++R P V RGH I+ VP +P+VV D +S+ K Sbjct: 15 TVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTPEKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNK 157
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14 Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 1 Query: 13 DASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D + + LP++ + RPD++ ++ QP+ AG +T+AES+G+GR + +PRV G + + AF GGR P ++ +H KIN ++ LV RGH++ + ++P V+ D E+V+ T Sbjct: 12 DITEEIELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTT 154
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14 Identity = 50/152 (32.89%), Postives = 70/152 (46.05%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D+ A V LP V A RPD++ N QPY +G +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + ES+E+T Sbjct: 8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14 Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 1 Query: 58 IRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 453 IRPD++ + + QP V AG + S ES+G G ++RIPR G R G F RGGR P K+ ++ H +IN +K+ S V ARGH +E VP +P+VV AE + + Sbjct: 52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINR 180
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14 Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 453 D+ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVK 151
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14 Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D+ + LPDV RPD++ N QPY AG +TSA WG+GR S +PR+ + + A RGGR P K K+N ++RY P+LV RGH E E+P+V ++ E ++KT Sbjct: 8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKT 152 The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bpback to top |