FC873231

Overview
NameFC873231
Unique NameFC873231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 6.035e-45
Identity = 85/145 (58.62%), Postives = 103/145 (71.03%), Query Frame = 1
Query:   22 STVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            S + LP V +  IRPD+V F+   + +N  Q +AV+ KAG Q SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MF P K++RRWHR +N+ QKRY           P+L+ ARGH I+ V E+PLVVSD  ES  KT
Sbjct:   19 SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKT 163          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_ENTHI (60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica GN=RPL4 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22
Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  133 KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLV 423
            KAG Q SA SWGTGRAV+RIPR+ G G+ R GQGAFGNM R G MF+P K +R+W RK     +R+           P+LV ARGH I  VP++P V
Sbjct:    3 KAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSV 99          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METTH (50S ribosomal protein L4P OS=Methanobacterium thermoautotrophicum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.830e-17
Identity = 47/148 (31.76%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   13 DASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +A   + LP++     RPD++     +      QP+     AG +TSA+S+G GR V+ +PR+  G      + AF     GGR   P +  + +H +IN  ++R              LV ARGH+IE VP++PLVV D    +++T
Sbjct:   11 EAIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRT 153          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METS3 (50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 1
Query:    4 MVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            M  +    + LP +     RPD++     +      QP+    +AG +TSA+ WG+GR  +R+PR+  G      + AF  M  GGR   PT+  +  H KIN+ ++R+             LV  RGH++  + ++P++V D   SV+ T
Sbjct:    8 MEGEVKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTT 153          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METKA (50S ribosomal protein L4P OS=Methanopyrus kandleri GN=rpl4p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.642e-16
Identity = 47/143 (32.87%), Postives = 68/143 (47.55%), Query Frame = 1
Query:   25 TVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 453
            TV LP   +  +R D++         N  QPY    +AG +TSAESWG G  V+ +PRV G     AG+ A      GG+        + W +++N  ++R            P  V  RGH I+ VP +P+VV D  +S+ K
Sbjct:   15 TVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTPEKDWTQRVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNK 157          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METST (50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   13 DASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D +  + LP++ +   RPD++     ++     QP+     AG +T+AES+G+GR  + +PRV G     + + AF     GGR   P ++   +H KIN  ++               LV  RGH++  + ++P V+ D  E+V+ T
Sbjct:   12 DITEEIELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTT 154          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 50/152 (32.89%), Postives = 70/152 (46.05%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D+   A   V LP V  A  RPD++         N  QPY     +G +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  ES+E+T
Sbjct:    8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 1
Query:   58 IRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 453
            IRPD++   + +      QP  V   AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINR 180          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEK 453
            D+  ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVK 151          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D+       + LPDV     RPD++         N  QPY     AG +TSA  WG+GR  S +PR+       + + A     RGGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  ++ E ++KT
Sbjct:    8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKT 152          
The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL4_CAEEL6.035e-4558.6260S ribosomal protein L4 OS=Caenorhabditis elegans... [more]
RL4_ENTHI1.447e-2253.6160S ribosomal protein L4 (Fragments) OS=Entamoeba ... [more]
RL4_METTH1.830e-1731.7650S ribosomal protein L4P OS=Methanobacterium ther... [more]
RL4_METS31.549e-1629.8050S ribosomal protein L4P OS=Methanobrevibacter sm... [more]
RL4_METKA2.642e-1632.8750S ribosomal protein L4P OS=Methanopyrus kandleri... [more]
RL4_METST1.110e-1428.3850S ribosomal protein L4P OS=Methanosphaera stadtm... [more]
RL4_METAC2.473e-1432.8950S ribosomal protein L4P OS=Methanosarcina acetiv... [more]
RL4_PYRAE3.230e-1434.8550S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]
RL4_METBU3.230e-1433.5550S ribosomal protein L4P OS=Methanococcoides burt... [more]
RL4_METBF3.230e-1431.5850S ribosomal protein L4P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bp
GACATGGTGACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAA
GGCCTCTATCCGACCCGACATCGTGGGATTTGTCCACTCTAACATCTCCC
AGAACAGTCCCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACC
TCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGT
CCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGT
GTCGCGGTGGTCGCATGTTCACTCCCACAAAGATCTGGCGCCGATGGCAC
CGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGC
CGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGA
CTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAG
AAAACCATCAGCTGCCCTTAAAAGTCCTGAAGCAGATCGGTGCCTATGCT
GACGCCGAAAAG
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