FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig429 contig Ccv1_Contig429:13..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+ G+++P  KR+E  L YI+G+G  R+R+IL +  +  +   KD+SEEE+ TIRD + K ++IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK
Sbjct:    2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACLD (30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL YI G+GRT A+QIL +  + E+   +D++EEEL  IRD + K  +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_GLUDA (30S ribosomal protein S13 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV IP NKR+   L+YI+G+G T+A +I   +++  E ++  ++S++E++ IR+ + S+Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK VAIAGKKKA R
Sbjct:    2 ARIAGVNIPTNKRVTIGLRYIYGIGETKAEEICRRLEIPAERRVN-ELSDDEILKIRELIDSEYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_EXIS2 (30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP  KRI  SL YI+GVG+T A+++L +  + E+  T++++EE+L  +RD + K  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLDKVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACHD (30S ribosomal protein S13 OS=Bacillus halodurans GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL YI+GVGR+ A++IL    + EN   +D++EEEL  IR  V ++ +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVEEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LYSSC (30S ribosomal protein S13 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.884e-28
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL YI G+G+T A+++L D  + E+   +D++E+EL  IR+++  Y +EGDLRR  +L I+RL EI  +RGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIFGIGKTTAQKVLADAGISEDTRVRDLTEDELNKIREQLDSYKLEGDLRRETSLNIKRLMEIGSFRGIRHRRGLPVRGQNTKNNARTRKGPRKTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_GEOSW (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.884e-28
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL YI+G+G++ A++IL +  + E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ANOFW (30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.920e-28
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL YI+G+G+  A++IL +  + E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVDRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RR13_PORYE (30S ribosomal protein S13-2, chloroplastic OS=Porphyra yezoensis GN=rps13-2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.920e-28
Identity = 60/124 (48.39%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV++P NKRIE +L YI+G+G +R+++IL    ++  I  +D++++++++IR+ + S Y IEGDL+RF +++I+RL EI  YRG RH  GLP RGQ T+ N RT +G +  +AGKKKAPR
Sbjct:    2 ARIAGVDLPRNKRIEIALTYIYGIGLSRSKEILEKTNIDADIKCQDLNDQQVVSIREILESNYQIEGDLKRFESMSIKRLMEISTYRGRRHRLGLPLRGQRTRTNARTRRGGKKTVAGKKKAPR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCMO (30S ribosomal protein S13 OS=Mycoplasma mobile GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.426e-28
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+  VEIPNNKR+  SL Y++G+GR+ ++QIL +  ++  I  KD+SEE+L  IR+  S++  EGDLRR   L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R  +AGKK
Sbjct:    2 ARILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_CLONN1.691e-2855.0030S ribosomal protein S13 OS=Clostridium novyi (st... [more]
RS13_BACLD1.691e-2855.8330S ribosomal protein S13 OS=Bacillus licheniformi... [more]
RS13_GLUDA2.209e-2850.4030S ribosomal protein S13 OS=Gluconacetobacter dia... [more]
RS13_EXIS22.209e-2853.3330S ribosomal protein S13 OS=Exiguobacterium sibir... [more]
RS13_BACHD2.209e-2855.0030S ribosomal protein S13 OS=Bacillus halodurans G... [more]
RS13_LYSSC2.884e-2851.6730S ribosomal protein S13 OS=Lysinibacillus sphaer... [more]
RS13_GEOSW2.884e-2853.3330S ribosomal protein S13 OS=Geobacillus sp. (stra... [more]
RS13_ANOFW4.920e-2852.5030S ribosomal protein S13 OS=Anoxybacillus flavith... [more]
RR13_PORYE4.920e-2848.3930S ribosomal protein S13-2, chloroplastic OS=Porp... [more]
RS13_MYCMO6.426e-2853.7830S ribosomal protein S13 OS=Mycoplasma mobile GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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