FC873241

Overview
NameFC873241
Unique NameFC873241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15349 contig Ccv1_Contig15349:527..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_SACKO (Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EIT+LAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITSLAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_CAEEL (Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT1_DROME (Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of FC873241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ACT4_BOMMO9.075e-2793.33Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]
ACT4_ARTSX9.075e-2793.33Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_LIMPO9.075e-2793.33Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT3B_HELAM9.075e-2793.33Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT3A_HELAM9.075e-2793.33Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT2_SACKO9.075e-2793.33Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1[more]
ACT2_ONCVO9.075e-2793.33Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1[more]
ACT2_CAEEL9.075e-2793.33Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV... [more]
ACT2_ARATH9.075e-2795.00Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT1_DROME9.075e-2793.33Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873241 ID=FC873241; Name=FC873241; organism=Citrus clementina; type=EST; length=556bp
GAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCC
ACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCC
TCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCT
GGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGA
TGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGC
GAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTGGGGCCATTGAAG
GAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTG
AGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCCTTGCATTCATCT
GGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTTTAAA
GTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCTATT
TCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCAAAAAAAAAAAAA
AAAAAA
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