FC873245

Overview
NameFC873245
Unique NameFC873245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873245_ssr7 microsatellite FC873245_ssr7:7..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10138 contig Ccv1_Contig10138:1..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873245 vs. ExPASy Swiss-Prot
Match: PLD2_MOUSE (Phospholipase D2 OS=Mus musculus GN=Pld2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.639e-17
Identity = 63/193 (32.64%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  130 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EGDPKT---NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAM 693
            ++ SI  AY+  IR +QHF+YIENQ+F+  S         G       E+  +I       + F VY+++P+ P  EGD  T   N++Q IL +  +T+      +   L+     A  +DY+S   L    E         G  +S+       +IY+H+K +I DD  VI+GSANIN RS+ G +D+E+A+
Sbjct:  618 LENSILNAYLHTIRESQHFLYIENQFFISCSDGRTVLNKVGD------EIVDRILKAHEQGQCFRVYLLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEHSILHRLKAAMGTAW-RDYMSICGLRTHGEL-------GGHPISE-------LIYIHSKMLIADDRTVIIGSANINDRSLLGKRDSELAI 789          
BLAST of FC873245 vs. ExPASy Swiss-Prot
Match: PLD2_BOVIN (Phospholipase D2 OS=Bos taurus GN=PLD2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.639e-17
Identity = 65/194 (33.51%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  130 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EGDPKT---NTVQEILFWQSQTM-QMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAM 693
            ++ SI  AY+  IR +QHF+YIENQ+F+  S         G       E+  +I    +  + F VYV++P+ P  EGD  T   N++Q IL +  +T+ +  YS++ +    M  +   ++Y+S   L    E         G  VS+       +IY+H+K +I DD  VI+GSANIN RS+ G +D+E+A+
Sbjct:  618 LENSILNAYLHTIRESQHFLYIENQFFISCSDGRTVLNKVGD------EIVDRILKAHKQGQCFRVYVLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEYSILHRLKAAMGTEW--RNYISVCGLRTHGEL-------GGHPVSE-------LIYIHSKMLIADDRTVIIGSANINDRSLLGKRDSELAV 789          
BLAST of FC873245 vs. ExPASy Swiss-Prot
Match: YA2G_SCHPO (Uncharacterized protein C2F7.16c OS=Schizosaccharomyces pombe GN=SPAC2F7.16c PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.651e-17
Identity = 74/239 (30.96%), Postives = 123/239 (51.46%), Query Frame = 1
Query:  130 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EGD---PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKQKHPH--GQI-YGYRKSLWSEHLGMLDNCFEEPE 822
            +++SIQ AY+  I  ++HFIYIENQ+F+ S+    + +    +N +   L  +I    + NE++   ++IP+ P  EG     +  +++ I+  Q +++      +   L    +D     YL FY  G R  A    L  N + V++       MIYVHAK +I DD   ++GSANIN+RS+ G++D+EIA          ++    P+  G+  +  RK L  EHLG+  +  E+ E
Sbjct:  805 VEQSIQNAYVTCIEKSEHFIYIENQFFVTST----TCEGTTIENRVGDALVERIIRAHKNNEKWRGVIMIPLLPGFEGQIDLQEGGSLRLIVECQYRSICHGEHSIFGRLNAKGIDG--SKYLRFY--GLRGWAH---LGENHELVTE-------MIYVHAKILIADDRVAVIGSANINERSLLGNRDSEIAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGLETDVLEQRE 1025          
BLAST of FC873245 vs. ExPASy Swiss-Prot
Match: PLD2_HUMAN (Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.651e-17
Identity = 64/193 (33.16%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  130 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EGDPKT---NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAM 693
            ++ SI  AY+  IR +QHF+YIENQ+F+  S         G       E+  +I    +    + VYV++P+ P  EGD  T   N++Q IL +  +T+      +   L+     A  +DY+S   L    E         G  VS+       +IY+H+K +I DD  VI+GSANIN RS+ G +D+E+A+
Sbjct:  618 LENSILNAYLHTIRESQHFLYIENQFFISCSDGRTVLNKVGD------EIVDRILKAHKQGWCYRVYVLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEYSILHRLKAAMGTAW-RDYISICGLRTHGEL-------GGHPVSE-------LIYIHSKVLIADDRTVIIGSANINDRSLLGKRDSELAV 789          
BLAST of FC873245 vs. ExPASy Swiss-Prot
Match: SPO14_YEAST (Phospholipase D1 OS=Saccharomyces cerevisiae GN=SPO14 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.769e-17
Identity = 59/191 (30.89%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  139 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQE-----ILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE-APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAM 693
            SIQ AY++ I  ++HFIYIENQ+F+ S+     +      N I   L  +I    +  + +  +++IP+ P  D   +T +      I+ +Q Q++         +L+++ +D  P  Y+ F+ L K    AP + L                 +YVHAK +I DD   I+GSANIN+RS  G++D+E+A+
Sbjct:  958 SIQNAYLKLIEQSEHFIYIENQFFITSTV----WNGTCVLNKIGDALVDRIVKANQEKKPWKAFILIPLMPGFDSPVDTAEASSLRLIMQFQYQSISRGEHSTFSKLKKLNID--PAQYIQFFSLRKWSTFAPNERLITE-------------QLYVHAKILIADDRRCIIGSANINERSQLGNRDSEVAI 1129          
The following BLAST results are available for this feature:
BLAST of FC873245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLD2_MOUSE1.639e-1732.64Phospholipase D2 OS=Mus musculus GN=Pld2 PE=1 SV=2[more]
PLD2_BOVIN1.639e-1733.51Phospholipase D2 OS=Bos taurus GN=PLD2 PE=2 SV=1[more]
YA2G_SCHPO3.651e-1730.96Uncharacterized protein C2F7.16c OS=Schizosaccharo... [more]
PLD2_HUMAN3.651e-1733.16Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2[more]
SPO14_YEAST4.769e-1730.89Phospholipase D1 OS=Saccharomyces cerevisiae GN=SP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873245 ID=FC873245; Name=FC873245; organism=Citrus clementina; type=EST; length=835bp
TCTCTGTCTCTCTCTCTCTCTTTTGGGTCACAGATTTTCCGGTCCATAGA
CTCAGGATCAGTGAAAGGATTTCCAAAATCTATTGAGGACATTGATGACC
AGAGCCTTATCTGTGCAAAAGATGTGGTGATAGATAAGAGCATTCAAACA
GCTTATATCCAAGCAATCAGATCTGCTCAGCATTTTATATATATTGAAAA
TCAGTATTTTCTTGGATCATCTTATGCATGGCCATCGTATAAAAATGCAG
GAGCTGATAATCTTATCCCGATGGAGTTGGCTTTAAAGATTGCTAGTAAA
ATTAGAGCTAATGAGAGATTTGCAGTGTATGTCATCATACCTATGTGGCC
TGAGGGTGATCCCAAAACTAACACCGTCCAAGAAATTCTGTTTTGGCAGA
GCCAGACGATGCAGATGATGTATAGTGTTGTTGCACAGGAACTGAGGGAA
ATGCAAGTGGACGCACATCCTCAAGATTACCTCAGTTTTTATTGTCTCGG
AAAACGGGAAGAAGCTCCTAAGGATGTATTGGCCAATAATGGTGATAAGG
TCTCTGATTCACAGAAAAATCAGCGCTTCATGATATATGTGCATGCCAAG
GGGATGATAGTAGATGATGAATATGTGATCATGGGATCTGCCAACATTAA
CCAAAGATCCATGGCTGGTTCCAAAGACACTGAGATAGCTATGGGTTCTT
ATCAGCCGCATCACACATGGGCTAGGAAGCAGAAACATCCACATGGTCAG
ATATATGGGTATAGGAAGTCACTTTGGTCAGAGCATCTTGGCATGCTAGA
TAATTGCTTTGAGGAACCAGAAAGTTTAGACTGTA
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