FC873249

Overview
NameFC873249
Unique NameFC873249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7564 contig Ccv1_Contig7564:28..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 88/219 (40.18%), Postives = 116/219 (52.97%), Query Frame = 3
Query:  147 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 779
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.943e-30
Identity = 97/250 (38.80%), Postives = 129/250 (51.60%), Query Frame = 3
Query:  120 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 785
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVN
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVN 263          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 86/210 (40.95%), Postives = 116/210 (55.24%), Query Frame = 3
Query:  231 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 785
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVN
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVN 265          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.518e-25
Identity = 91/261 (34.87%), Postives = 120/261 (45.98%), Query Frame = 3
Query:  138 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNT 788
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++T
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 281          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.518e-25
Identity = 76/188 (40.43%), Postives = 98/188 (52.13%), Query Frame = 3
Query:  228 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 779
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 241          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-24
Identity = 81/183 (44.26%), Postives = 99/183 (54.10%), Query Frame = 3
Query:  225 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 764
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKNGRLAM  MFG  VQ+ VTGK P+ NL D
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          

HSP 2 Score: 110.923 bits (276), Expect = 8.312e-24
Identity = 71/192 (36.98%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  216 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 782
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D       +  E+KNGRLA+ ++ G   Q + TG+ PL NL+ HLA+P+
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPI 351          

HSP 3 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 72/188 (38.30%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  228 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 782
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKNGRLA+ ++ GF VQ  V G  PL NLA+HL  P+
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPL 163          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.187e-24
Identity = 74/188 (39.36%), Postives = 98/188 (52.13%), Query Frame = 3
Query:  228 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 779
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.364e-24
Identity = 91/257 (35.41%), Postives = 115/257 (44.75%), Query Frame = 3
Query:  150 SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNT 788
            +K+V S  P + P           + P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++T
Sbjct:   45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHT 278          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 79/225 (35.11%), Postives = 98/225 (43.56%), Query Frame = 3
Query:  225 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 761
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:   65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of FC873249 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 93/271 (34.32%), Postives = 113/271 (41.70%), Query Frame = 3
Query:  144 TGSKSVSSGSPWYGPDRVKYLGPFSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNTMPG 797
            T   + S+G+   G    KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S FG+ VQA+ TG+G L +LA   AD +N   G
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNNGKG 279          
The following BLAST results are available for this feature:
BLAST of FC873249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB12_PETHY8.293e-3240.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC5.943e-3038.80Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.121e-2840.95Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4A_ARATH7.518e-2534.87Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB24_ARATH7.518e-2540.43Chlorophyll a-b binding protein 4, chloroplastic O... [more]
LH18_EUGGR1.675e-2444.26Light-harvesting complex I LH38 proteins (Fragment... [more]
CB24_PEA2.187e-2439.36Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4B_ARATH6.364e-2435.41Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH2.767e-1935.11Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE8.901e-1834.32Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873249 ID=FC873249; Name=FC873249; organism=Citrus clementina; type=EST; length=800bp
CTTGCACAGCTTCTGCTTCTCAATTAAATTCCGCAATGGCAACCTCAACA
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTCGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGCAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTT
CCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCG
AGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGC
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGG
TTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACCGACCCATTGTACC
CAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATACAATGCCTGGGCCT
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