FC873251

Overview
NameFC873251
Unique NameFC873251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  188 ARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_MACFA (60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  188 ARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_HUMAN (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  188 ARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL8B_YEAST (60S ribosomal protein L8-B OS=Saccharomyces cerevisiae GN=RPL8B PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 30/60 (50.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 180
            +RLG++V++KT++V  LT V+ ED+   +K++  I ANF DKY+E++K WGGGI+G+K+Q
Sbjct:  184 ARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQ 243          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL8A_YEAST (60S ribosomal protein L8-A OS=Saccharomyces cerevisiae GN=RPL8A PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 30/60 (50.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 180
            +RLG++V++KT++V  LT V+ ED+   +K++  I ANF DKY+E++K WGGGI+G+K+Q
Sbjct:  184 ARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQ 243          
BLAST of FC873251 vs. ExPASy Swiss-Prot
Match: RL7A_CHICK (60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 SRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 177
            +RLG +VH+KT + +  T V  EDK   +K++EA+K N+ND+Y+E+R+ WGG ++G KS
Sbjct:  188 ARLGRLVHRKTCTCVAFTQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLGPKS 246          
The following BLAST results are available for this feature:
BLAST of FC873251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL7A_MOUSE1.041e-1247.4660S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]
RL7A_MACFA1.041e-1247.4660S ribosomal protein L7a OS=Macaca fascicularis G... [more]
RL7A_HUMAN1.041e-1247.4660S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
RL8B_YEAST1.775e-1250.0060S ribosomal protein L8-B OS=Saccharomyces cerevi... [more]
RL8A_YEAST1.775e-1250.0060S ribosomal protein L8-A OS=Saccharomyces cerevi... [more]
RL7A_CHICK1.775e-1247.4660S ribosomal protein L7a OS=Gallus gallus GN=RPL7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873251 ID=FC873251; Name=FC873251; organism=Citrus clementina; type=EST; length=392bp
TCACGTTTGGGATCTATTGTCCACAAGAAGACAGCTTCTGTATTGTGTTT
GACAACAGTTAAGAATGAGGATAAGATGGAATTCAGCAAGATCCTTGAGG
CCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTTAAGAAAGAAGTGG
GGAGGTGGTATTATGGGCTCCAAATCACAGGCAAAAACCAAGGCCAAGGA
GAAACTTCTTGCCAAGGAAGCTGCTCAGAGGCTGACCTAGGATTTTGCTC
AGTCTTAAGAGAGTCCCAATGTTTTGTTATTTCTTGTGCTTTCATCATCT
TTTTATTTTAATGAACATGTTTCTATGTAGTCTCTTAGCATTTTACCTTA
TTAAGATTTTTAATTGAACTTCTGAAAAAAAAAAAAAAAAAA
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