FC873260

Overview
NameFC873260
Unique NameFC873260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_THEPD (V-type ATP synthase alpha chain OS=Thermofilum pendens (strain Hrk 5) GN=atpA PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.448e-86
Identity = 152/264 (57.58%), Postives = 200/264 (75.76%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDF 790
            VR PRP   +L ++ PLL GQR++D  FP   GG  AIPG FG GKTV    +S YS+S  VVY+GCGERGNE+AE+L +FP L +    GR   +++R+ ++ANTSNMPV+AREASIY G+TIAEY+RD GY+V+++ADSTSRWAEALREI+GRL E+P + GYPAYL  ++A FYER G+VK LG PER+GSVT++GAVSPPGGD+++PVT  TL  V   W LD  LA R+HFP++NWL S+S+Y+  +E ++ +   P+F
Sbjct:  196 VRQPRPYKERLPSEVPLLIGQRIIDTFFPIAKGGAGAIPGGFGTGKTVTLHKVSMYSDSQIVVYIGCGERGNEIAEMLKEFPVL-VDPKSGRP--IIERSIIIANTSNMPVSAREASIYMGVTIAEYYRDQGYDVTLIADSTSRWAEALREIAGRLGELPVERGYPAYLPDKIAEFYERGGRVKALGSPERSGSVTVLGAVSPPGGDYNEPVTIHTLRFVGTMWALDTDLAYRRHFPAINWLKSFSQYADIIERWWVKNVSPEF 456          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULSO (V-type ATP synthase alpha chain OS=Sulfolobus solfataricus GN=atpA PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.883e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFKEKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTIGNPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_STAMF (V-type ATP synthase alpha chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpA PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.883e-85
Identity = 159/265 (60.00%), Postives = 196/265 (73.96%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDF 790
            VR PRP   KL    P+LTGQRV+D  FP   GG  AIPG FG GKTV  Q L+K+S  D  +YVGCGERGNEMA+ L  F +L     D R  +++++R+  +ANTSNMPVAARE SI+ G TI EYFRDMGY+V M+ADSTSRWAEA+REISGRL E+P + GYPAYL +RLASFYER+G VK LG P+RTGS+TI+GAVSPPG DFS+PVT ATL IV+  + LD  LA R+H+P++NWLISYS Y     + +++  DP +
Sbjct:  192 VRKPRPYREKLEHREPVLTGQRVIDFFFPLAKGGKAAIPGGFGTGKTVTLQQLTKWSAVDIAIYVGCGERGNEMADALHSFRRLV----DPRTGKALVERSVFIANTSNMPVAARETSIFLGATIGEYFRDMGYHVLMVADSTSRWAEAMREISGRLEELPGEEGYPAYLGSRLASFYERSGYVKTLGRPDRTGSLTIMGAVSPPGADFSEPVTQATLRIVRALYALDVNLAYRRHYPAINWLISYSLYVDNVTDWWHKNIDPSW 452          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULIM (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.422e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFKEKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULIK (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=atpA PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.422e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFKEKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULIA (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain M.16.27) GN=atpA PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.422e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFKEKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULIY (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.388e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFREKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULIN (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=atpA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.388e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFREKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULIL (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.388e-85
Identity = 155/248 (62.50%), Postives = 188/248 (75.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 745
            VR PRP   KL    PLLTG RVLD +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP L      GR   +++RT LVANTSNMPVAAREASIY GIT+AEYFRD GY+  ++ADSTSRWAEALR++ GR+ EMPA+ G+P+YL +RLA +YERAG+VK +G PER GSVT+  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NWL  +S Y
Sbjct:  194 VRIPRPFREKLEPTEPLLTGTRVLDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKIVIYVGCGERGNEMTDELRQFPSLKDPWT-GRP--LLERTILVANTSNMPVAAREASIYVGITMAEYFRDQGYDTLLVADSTSRWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVKTVGKPERFGSVTVASAVSPPGGDFTEPVTSQTLRFVKVFWPLDVSLAQARHYPAINWLQGFSAY 438          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_SULAC (V-type ATP synthase alpha chain OS=Sulfolobus acidocaldarius GN=atpA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.388e-85
Identity = 152/258 (58.91%), Postives = 193/258 (74.81%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            VR PRP   KL    PLLTG RV+D +FP   GGT AIPG FG GKTV  Q+L+K+S +  V+YVGCGERGNEM + L  FP+L         + +++RT LVANTSNMPVAARE+SIY G+T+AEYFRD GY+V ++ADSTSRWAEALRE+ GR+ EMPA+ G+P+YL +RLA +YERAG+V  LG PER GSV+I  AVSPPGGDF++PVTS TL  V+VFW LD  LAQ +H+P++NW+  +S Y   + S++ +
Sbjct:  195 VRIPRPFKEKLEPTEPLLTGTRVVDTIFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSEAKVVIYVGCGERGNEMTDELRQFPKLK---DPWTGKPLLQRTILVANTSNMPVAARESSIYVGVTMAEYFRDQGYDVLLVADSTSRWAEALRELGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVIALGKPERFGSVSIASAVSPPGGDFTEPVTSNTLRFVRVFWPLDVSLAQARHYPAINWIQGFSAYVDLVASWWHK 449          
The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATA_THEPD4.448e-8657.58V-type ATP synthase alpha chain OS=Thermofilum pen... [more]
VATA_SULSO2.883e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus solf... [more]
VATA_STAMF2.883e-8560.00V-type ATP synthase alpha chain OS=Staphylothermus... [more]
VATA_SULIM6.422e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_SULIK6.422e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_SULIA6.422e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_SULIY8.388e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_SULIN8.388e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_SULIL8.388e-8562.50V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_SULAC8.388e-8558.91V-type ATP synthase alpha chain OS=Sulfolobus acid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bp
TGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCAC
TGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGT
GGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAG
TCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTT
GTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAA
TTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTAC
AACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTT
CGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTAC
AATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCG
TGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTG
CTTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTT
AAATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGC
AGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCC
TCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGA
AAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCGAAGTATTCAAC
AGCATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACAT
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