FC873260

Overview
NameFC873260
Unique NameFC873260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRFU (V-type ATP synthase alpha chain OS=Pyrococcus furiosus GN=atpA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.434e-76
Identity = 139/218 (63.76%), Postives = 174/218 (79.82%), Query Frame = 2
Query:  140 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES-FYEQFDPDF 790
            TV    L+K+S++  VVY+GCGERGNEM +VL +FP+L         + +M+RT L+ANTSNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYLA+RLA FYERAG+V  LG   R GSV+++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++  +++  DP++
Sbjct:  666 TVTQHQLAKWSDAQVVVYIGCGERGNEMTDVLEEFPKLK---DPNTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVQDWWHKNVDPEW 880          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRIL (V-type ATP synthase alpha chain OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.172e-76
Identity = 138/264 (52.27%), Postives = 184/264 (69.70%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDF 790
            VR PRP   KL    PL+TG R +D +FP   GGT AIPG FG GKTV  + LS Y+ S  ++ V CGERGNE A+ L    +L           +++RTT++ NTSNMPVAAREAS+Y G TI EYFRD GY+V ++ADSTSRWAEA+RE++ R+ EMP++ GYPAYL  RLA FYERAG+V  +G  ER GS+TI  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL+++S+Y   +E ++ +   PD+
Sbjct:  197 VRRPRPFREKLPPVEPLITGVRTIDTMFPIAKGGTAAIPGPFGSGKTVAIRTLSMYAQSRIIIPVLCGERGNEAADALQGLLKLK---DPNTGRPLLERTTIIVNTSNMPVAAREASVYMGTTIGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAEFYERAGRVVLMGSKERIGSLTIAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLLAFSRYVDTVEVWWSKNISPDW 457          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRHO (V-type ATP synthase alpha chain OS=Pyrococcus horikoshii GN=atpA PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.117e-76
Identity = 137/218 (62.84%), Postives = 174/218 (79.82%), Query Frame = 2
Query:  140 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES-FYEQFDPDF 790
            TV    L+K+S++  V+Y+GCGERGNEM +VL +FP+L         + +M+RT L+ANTSNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYLA++LA FYERAG+V  LG   R GSV+++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++  +++  DP++
Sbjct:  617 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK---DPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 831          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRAB (V-type ATP synthase alpha chain OS=Pyrococcus abyssi GN=atpA PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 9.295e-76
Identity = 137/218 (62.84%), Postives = 174/218 (79.82%), Query Frame = 2
Query:  140 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES-FYEQFDPDF 790
            TV    L+K+S++  V+Y+GCGERGNEM +VL +FP+L         + +M+RT L+ANTSNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYLA++LA FYERAG+V  LG   R GSV+++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++  +++  DP++
Sbjct:  670 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK---DPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEW 884          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRCJ (V-type ATP synthase alpha chain OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.214e-75
Identity = 134/258 (51.94%), Postives = 183/258 (70.93%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            VR PRP   KL    PL+TG RV+D +FP   GGT A+PG FG GKTV+ + LS ++ S  ++ V CGERGNE A+ L    +L           +++RTT++ NTSNMPVAAREAS+Y G T+ EYFRD GY+V ++ADSTSRWAEA+RE++ R+ EMP++ GYPAYL  RLA FYERAG+V  +G  ER GS+TI  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL+++S+Y   +E ++ +
Sbjct:  197 VRRPRPFREKLPPVEPLITGVRVIDTMFPIAKGGTAAVPGPFGSGKTVMIRTLSMFAQSRIIIPVLCGERGNEAADALQGLLKLK---DPSTGRPLLERTTIIVNTSNMPVAAREASVYMGTTLGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAEFYERAGRVVLIGSGERVGSLTIAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLMAFSRYVDTVEVWWSK 451          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRAE (V-type ATP synthase alpha chain OS=Pyrobaculum aerophilum GN=atpA PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.613e-75
Identity = 133/258 (51.55%), Postives = 181/258 (70.16%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            VR PRP   KL    PL+TG R +D +FP   GGT A+PG FG GKTV+ + LS ++ S  ++ V CGERGNE A+ L    +L           +++RTT++ NTSNMPVAAREAS+Y G T+ EYFRD GY+V ++ADSTSRWAEA+RE++ R+ EMP++ GYPAYL  RLA FYERAG+V   G  ER GS+TI  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL+++S+Y   +E ++ +
Sbjct:  197 VRRPRPFKEKLPPVEPLITGVRTVDTMFPIAKGGTAAVPGPFGSGKTVMIRTLSMFAQSRFIIPVLCGERGNEAADALQGLLKLK---DPSTGRPLLERTTIIVNTSNMPVAAREASVYMGTTLGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAEFYERAGRVVLYGSKERVGSLTIAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLVAFSRYVDTVEVWWSK 451          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_THENV (V-type ATP synthase alpha chain OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=atpA PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.290e-74
Identity = 135/258 (52.33%), Postives = 182/258 (70.54%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            VR PRP   KL    PL+TG R +D +FP   GG  A+PG FG GKTV  + LS ++ S  ++ V CGERGNE A+ L    +L      GR  S+++RTT++ NTSNMPVAAREAS+Y G T+ EYFRD GY+V ++ADSTSRWAEA+RE++ R+ EMP++ GYPAYL  RLA FYERAG+V  +G  ER GS+TI  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL ++S+Y   +E ++ +
Sbjct:  197 VRRPRPFREKLPPVEPLITGVRTIDTMFPIAKGGAAAVPGPFGSGKTVTIRTLSMFAQSRFIIPVLCGERGNEAADALHGLLKLKDPTT-GR--SLLERTTIIVNTSNMPVAAREASVYMGTTLGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAEFYERAGRVVLIGSKERVGSLTIAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLAAFSRYVDTVEVWWSK 451          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_THEAC (V-type ATP synthase alpha chain OS=Thermoplasma acidophilum GN=atpA PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 2.290e-74
Identity = 132/212 (62.26%), Postives = 167/212 (78.77%), Query Frame = 2
Query:  140 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            TVI   L+K+S+++ VVY+GCGERGNEM E+L  FP+L         + +M RT L+ANTSNMPVAAREASIYTGITIAEY+RDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL  R++ FYER+G+ + +   ER GS+T++GAVSPPGGD S+PV+  TL + +VFW LD  LA R+HFPS+NWL SYS Y+  L S+Y++
Sbjct:  410 TVIQHQLAKWSDANIVVYIGCGERGNEMTEILTTFPELK---DPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGRRVSEFYERSGRARLVSPDERYGSITVIGAVSPPGGDISEPVSQNTLRVTRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDK 618          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_PYRAR (V-type ATP synthase alpha chain OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=atpA PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.905e-74
Identity = 132/258 (51.16%), Postives = 180/258 (69.77%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            VR PRP   KL    PL+TG R +D +FP   GG  A+PG FG GKTV+ + LS ++ S  ++ V CGERGNE A+ L    +L           +++RTT++ NTSNMPVAAREAS+Y G T+ EYFRD GY+V ++ADSTSRWAEA+RE++ R+ EMP++ GYPAYL  RLA FYERAG+V  +G  ER GS+TI  +VSPPGGDF++PVTS TL  +  FW L  +LA  +H+P+++WL ++S+Y   +E ++ +
Sbjct:  197 VRRPRPFREKLPPVEPLITGVRTVDTMFPIAKGGAAAVPGPFGSGKTVMIRTLSMFAQSRFIIPVLCGERGNEAADALQGLLKLK---DPATGRPLLERTTIIVNTSNMPVAAREASVYMGTTLGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAEFYERAGRVVLMGSKERIGSLTIAASVSPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSRHYPAIDWLAAFSRYVDTVEVWWSK 451          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: VATA_THEVO (V-type ATP synthase alpha chain OS=Thermoplasma volcanium GN=atpA PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.700e-74
Identity = 130/212 (61.32%), Postives = 167/212 (78.77%), Query Frame = 2
Query:  140 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 775
            TVI   L+K+S+++ VVY+GCGERGNEM E+L  FP+L   +     + +M RT L+ANTSNMPVAAREASIYTGITIAEY+RDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL  R++ FYER+G+ + +   +R GS+T++GAVSPPGGD S+PV+  TL + +VFW LD  LA R+HFPS+NWL SYS Y+  L  +Y++
Sbjct:  422 TVIQHQLAKWSDANIVVYIGCGERGNEMTEILTTFPELKDPVSG---QPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGRRISEFYERSGRARLVSPEDRFGSITVIGAVSPPGGDISEPVSQNTLRVTRVFWALDASLANRRHFPSINWLNSYSLYTEDLRHWYDE 630          
The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATA_PYRFU1.434e-7663.76V-type ATP synthase alpha chain OS=Pyrococcus furi... [more]
VATA_PYRIL4.172e-7652.27V-type ATP synthase alpha chain OS=Pyrobaculum isl... [more]
VATA_PYRHO7.117e-7662.84V-type ATP synthase alpha chain OS=Pyrococcus hori... [more]
VATA_PYRAB9.295e-7662.84V-type ATP synthase alpha chain OS=Pyrococcus abys... [more]
VATA_PYRCJ1.214e-7551.94V-type ATP synthase alpha chain OS=Pyrobaculum cal... [more]
VATA_PYRAE4.613e-7551.55V-type ATP synthase alpha chain OS=Pyrobaculum aer... [more]
VATA_THENV2.290e-7452.33V-type ATP synthase alpha chain OS=Thermoproteus n... [more]
VATA_THEAC2.290e-7462.26V-type ATP synthase alpha chain OS=Thermoplasma ac... [more]
VATA_PYRAR3.905e-7451.16V-type ATP synthase alpha chain OS=Pyrobaculum ars... [more]
VATA_THEVO8.700e-7461.32V-type ATP synthase alpha chain OS=Thermoplasma vo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bp
TGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCAC
TGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGT
GGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAG
TCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTT
GTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAA
TTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTAC
AACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTT
CGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTAC
AATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCG
TGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTG
CTTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTT
AAATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGC
AGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCC
TCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGA
AAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCGAAGTATTCAAC
AGCATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACAT
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