FC873260

Overview
NameFC873260
Unique NameFC873260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: Y4YI_RHISN (Probable ATP synthase y4yI OS=Rhizobium sp. (strain NGR234) GN=NGR_a00640 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 76/253 (30.04%), Postives = 113/253 (44.66%), Query Frame = 2
Query:    5 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 763
            R P P++ ++  + P   G R LD L     G    I G  G GK+ +   + K + +D V+    GERG E+ E +               E  ++R  +V  TS+     R         +AEYFR+ G  V+++ DS +R+  A+REI     E P   G+P  + A L    ERAG    LG     GS+T    V   G    DP+   +  I+     L + LA R HFP+++ L S S+   A+ S
Sbjct:  144 RAPNPMTRRMV-ERPFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIGERGREVREFVERH----------LGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAG----LG---ERGSITAFYTVLVEGDGTGDPIAEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVS 378          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: FLII_BUCBP (Flagellum-specific ATP synthase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fliI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 67/222 (30.18%), Postives = 113/222 (50.90%), Query Frame = 2
Query:   56 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVN 721
            TG R ++ L     G    +  + G GK+V+   +++Y+ +D V+    GERG E+ E    F    +T      E+V+ R+ +++  S   V  +       + IAEYFRD  ++V ++ DS +R+A A REIS  + E+P   GYP  + ++L S  ERAG      G   +GS+T    V     +  DP++ +  SI+     L ++ A+  H+P++N
Sbjct:  161 TGIRSINGLLTIGRGQKIGLFASSGLGKSVLLGMMTRYTQADIVILSLIGERGREVKE----FIDSVLT------ETVLSRSIVISAPSESSVLMQTRGAIYAMRIAEYFRDKNFHVLLIMDSLTRYAMAHREISLSIGELPVSKGYPPSVFSKLFSLIERAG-----NGKINSGSITAFFTVLTEEEERYDPISESARSILDGHIILSREYAESGHYPAIN 367          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: FLII_BACSU (Flagellum-specific ATP synthase OS=Bacillus subtilis GN=fliI PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 79/251 (31.47%), Postives = 111/251 (44.22%), Query Frame = 2
Query:   17 PVSSKLAADTPLL---------TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            PVS++ +   P+           G R +D+L     G    I    G GK+ +   ++K + +D  V    GERG E+ E +           D  +E  +KR+ +V  TS+ P   R  + YT   IAEYFRD G NV  M DS +R A A REI     E P   GY   + A L    ER        G    G++T    V   G D ++P+      I+     LD+ LA +  FP+VN L S S+
Sbjct:  122 PVSTEQSPPNPMKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALVGERGREVREFIEK---------DLGKEG-LKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMFMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERT-------GANEHGTITAFYTVLVDGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISR 355          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_SILST (ATP synthase subunit beta OS=Silicibacter sp. (strain TM1040) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 74/235 (31.49%), Postives = 113/235 (48.09%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            L+TG +V+D L P   GG   + G  G GKTV+   L       +S   V+ G GER  E  ++  +  +  +  PD  EES   +  LV    N P  AR     TG+T+AE FRD  G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T + AV  P  D +DP  + T + +     L++ +++   +P+V+ L S S+
Sbjct:  128 LVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAGVGERTREGNDLYHEMIESNVIKPDNLEES---QVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTK-------NGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLNRAISELGIYPAVDPLDSSSR 352          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 72/238 (30.25%), Postives = 116/238 (48.74%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTA 754
            L+TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +F +  +    G E S   +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ ++++  +P+V+ L S S+  +A
Sbjct:  131 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGS---KCALVYGQMNEPPGARARVGLTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------TKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSA 358          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHILW (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 71/234 (30.34%), Postives = 111/234 (47.44%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            L+TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER  E  ++  +  +  +    G E S   +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER            TGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+
Sbjct:  135 LVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGS---KAALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTT-------TTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSR 358          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHIL3 (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 71/234 (30.34%), Postives = 111/234 (47.44%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            L+TG +V+D L P   GG   + G  G GKTV+   L      ++    V+ G GER  E  ++  +  +  +    G E S   +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER            TGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+
Sbjct:  135 LVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGS---KAALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTT-------TTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSR 358          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_MYCS5 (ATP synthase subunit beta OS=Mycoplasma synoviae (strain 53) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 74/235 (31.49%), Postives = 111/235 (47.23%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            L TG +V+D L P   GG   + G  G GKTV+ Q L       ++   V+ G GER  E  ++  +           +   V+ +T LV    N P  AR     TG+T+AEYFRD    +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER           R+GS+T V AV  P  D +DP  + T S +     LD+ +A    +P+++ L S S+
Sbjct:  131 LETGIKVIDLLIPYAKGGKIGLFGGAGVGKTVLVQELINNIATQHNGLSVFTGVGERTREGNDLYYEM----------KAAGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDKQNQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITST-------RSGSITSVQAVYVPADDLTDPAPATTFSHLDAKTVLDRNVAALGIYPAIDPLESSSR 348          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CAMFF (ATP synthase subunit beta OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 73/233 (31.33%), Postives = 112/233 (48.07%), Query Frame = 2
Query:   56 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            TG +V+D L P   GG   + G  G GKTVI   L     + +S   V+ G GER  E  ++  +           +E  V+ +  L     N P  AR     TG+T+AEYFRD MG +V M  D+  R++++  E+S  L  +P+  GY   LA+ +    ER    K        GS+T V AV  P  D +DP  +   + +     L++ +A++  +P+V+ L S S+
Sbjct:  131 TGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEM----------KESGVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGRLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGIYPAVDPLDSTSR 346          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB1_PSYIN (ATP synthase subunit beta 1 OS=Psychromonas ingrahamii (strain 37) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 74/254 (29.13%), Postives = 121/254 (47.64%), Query Frame = 2
Query:    5 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQAL--SKYSNSDTV-VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTA 754
            R P  +S +       +TG +V+D L P   GG   + G  G GKTV+   +  +  S+ + + ++ G GER  E  E+  +           +E  V+    ++    N P  AR    +  +T+AEYFRD    +V ++ D+  R+ +A  EISG + +MP+  GY   + + L+S  ER    +        G++T + AV  P  DF+DP    T S +     L ++ A    +PS++ L S SK +TA
Sbjct:  119 RAPPTLSQRSTQSEIFVTGIKVIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVSHHNGISIFCGIGERSREGEELYREM----------KEAGVLPNMVMIFGQMNEPPGARFRVGHAALTMAEYFRDDESRDVLLLIDNIFRFIQAGSEISGLMGQMPSRLGYQPTMGSELSSLEERIANTE-------DGAITSIQAVYVPADDFTDPAAVHTFSHLSASIVLSRQRASEGLYPSIDPLQSSSKMATA 355          
The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y4YI_RHISN5.009e-2130.04Probable ATP synthase y4yI OS=Rhizobium sp. (strai... [more]
FLII_BUCBP5.009e-2130.18Flagellum-specific ATP synthase OS=Buchnera aphidi... [more]
FLII_BACSU5.009e-2131.47Flagellum-specific ATP synthase OS=Bacillus subtil... [more]
ATPB_SILST5.009e-2131.49ATP synthase subunit beta OS=Silicibacter sp. (str... [more]
ATPB_RHOPA5.009e-2130.25ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHILW5.009e-2130.34ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_RHIL35.009e-2130.34ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_MYCS55.009e-2131.49ATP synthase subunit beta OS=Mycoplasma synoviae (... [more]
ATPB_CAMFF5.009e-2131.33ATP synthase subunit beta OS=Campylobacter fetus s... [more]
ATPB1_PSYIN5.009e-2129.13ATP synthase subunit beta 1 OS=Psychromonas ingrah... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bp
TGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCAC
TGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGT
GGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAG
TCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTT
GTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAA
TTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTAC
AACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTT
CGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTAC
AATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCG
TGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTG
CTTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTT
AAATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGC
AGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCC
TCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGA
AAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCGAAGTATTCAAC
AGCATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACAT
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