FC873260

Overview
NameFC873260
Unique NameFC873260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: HRPB6_XANEU (Probable ATP synthase hrpB6 OS=Xanthomonas euvesicatoria GN=hrpB6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 77/246 (31.30%), Postives = 115/246 (46.75%), Query Frame = 2
Query:    5 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            + P P+  +L  + P+ TG R++D L     G    I  A G GK+ +    ++ +  D  V V  GERG E+ E    F +L +   DG     + R+ +V  TS+     R  + Y G  IAEYFRD G  V +M DS +R+A A REI     E P   G+P  + A L    ERAG          +GS+T    V       SDP+      I+     L +++A +  +P+++ L S S+
Sbjct:  133 QAPDPMRRRLI-EHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREVRE----FIELILGA-DG-----LARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGM-------GESGSITAFYTVLAEDDTGSDPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSR 360          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_UREPA (ATP synthase subunit beta OS=Ureaplasma parvum GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 78/252 (30.95%), Postives = 116/252 (46.03%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            +  P P  ++ A    +L TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +            E  V+ +T LV    N P  AR     +G+T+AE FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  + T S +     LD+ +A    +P+++ L S S+
Sbjct:  112 IHRPAPSFAEQAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVLMQELIHNIAKNHGGLSVFAGVGERTREGNDLYYEMA----------ESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFSHLDAKVVLDRAIASLGLYPAISPLQSTSR 346          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_UREP2 (ATP synthase subunit beta OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 78/252 (30.95%), Postives = 116/252 (46.03%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            +  P P  ++ A    +L TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +            E  V+ +T LV    N P  AR     +G+T+AE FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  + T S +     LD+ +A    +P+++ L S S+
Sbjct:  112 IHRPAPSFAEQAESIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVLMQELIHNIAKNHGGLSVFAGVGERTREGNDLYYEMA----------ESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFSHLDAKVVLDRAIASLGLYPAISPLQSTSR 346          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_THISH (ATP synthase subunit beta OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 77/251 (30.68%), Postives = 115/251 (45.82%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            +  P P   + A  T LL TG +V+D L P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           ++ +V+ +  LV    N P   R     TG+T+AE+FRD G +V M  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+
Sbjct:  108 IHRPAPSFDEQAGSTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM----------KDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEFFRDEGRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RUTMC (ATP synthase subunit beta OS=Ruthia magnifica subsp. Calyptogena magnifica GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 76/246 (30.89%), Postives = 117/246 (47.56%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA    LL TG +V+D + P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E +V+ + +LV    N P   R     TG+T+AEYFRD G++V +  D+  R+  A  E+S  L  MP+  GY   LA+ + +  ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYHELAPAAELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFSGVGERTREGNDFYHEM----------KESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGHDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQVAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 71/239 (29.71%), Postives = 116/239 (48.54%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL 757
            L+TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +F +  +    G E S   +  LV    N P  AR     +G+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ ++++  +P+V+ L S S+  + L
Sbjct:  131 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGS---KCALVYGQMNEPPGARARVALSGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------HKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 71/239 (29.71%), Postives = 116/239 (48.54%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL 757
            L+TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +F +  +    G E S   +  LV    N P  AR     +G+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ ++++  +P+V+ L S S+  + L
Sbjct:  131 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGS---KCALVYGQMNEPPGARARVALSGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------HKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 71/239 (29.71%), Postives = 116/239 (48.54%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL 757
            L+TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +F +  +    G E S   +  LV    N P  AR     +G+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ ++++  +P+V+ L S S+  + L
Sbjct:  131 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGS---KCALVYGQMNEPPGARARVALSGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------HKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 71/239 (29.71%), Postives = 116/239 (48.54%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL 757
            L+TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +F +  +    G E S   +  LV    N P  AR     +G+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ ++++  +P+V+ L S S+  + L
Sbjct:  131 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGS---KCALVYGQMNEPPGARARVALSGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------HKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_OLICO (ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.543e-21
Identity = 72/239 (30.13%), Postives = 116/239 (48.54%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL 757
            L+TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +F +  +    G E S   +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  + + + +     L++ ++++  +P+V+ L S S+  + L
Sbjct:  131 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGS---KCALVYGQMNEPPGARARVGLTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------TKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359          
The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HRPB6_XANEU6.543e-2131.30Probable ATP synthase hrpB6 OS=Xanthomonas euvesic... [more]
ATPB_UREPA6.543e-2130.95ATP synthase subunit beta OS=Ureaplasma parvum GN=... [more]
ATPB_UREP26.543e-2130.95ATP synthase subunit beta OS=Ureaplasma parvum ser... [more]
ATPB_THISH6.543e-2130.68ATP synthase subunit beta OS=Thioalkalivibrio sp. ... [more]
ATPB_RUTMC6.543e-2130.89ATP synthase subunit beta OS=Ruthia magnifica subs... [more]
ATPB_RHOPS6.543e-2129.71ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOPB6.543e-2129.71ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP56.543e-2129.71ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP26.543e-2129.71ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_OLICO6.543e-2130.13ATP synthase subunit beta OS=Oligotropha carboxido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bp
TGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCAC
TGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGT
GGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAG
TCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTT
GTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAA
TTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTAC
AACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTT
CGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTAC
AATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCG
TGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTG
CTTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTT
AAATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGC
AGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCC
TCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGA
AAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCGAAGTATTCAAC
AGCATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACAT
back to top