FC873260

Overview
NameFC873260
Unique NameFC873260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATN (ATP synthase subunit beta OS=Francisella tularensis subsp. novicida (strain U112) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.545e-21
Identity = 80/259 (30.89%), Postives = 119/259 (45.95%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFD 781
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           ++ +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+    L    E ++
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFAGVGERTREGNDFYYEM----------KDSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPLVVGQEHYE 354          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_DICNV (ATP synthase subunit beta OS=Dichelobacter nodosus (strain VCS1703A) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.545e-21
Identity = 76/246 (30.89%), Postives = 113/246 (45.93%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +L+  T LL TG +V+D L P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E  V+ + +LV    N P   R     TG+T+AEYFR+ G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELSNSTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFAGVGERTREGNDFYYEM----------KESDVLDKVSLVYGQMNEPAGNRFRVALTGLTMAEYFREEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERIASTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_UREU1 (ATP synthase subunit beta OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 78/252 (30.95%), Postives = 116/252 (46.03%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            +  P P  ++ A    +L TG +V+D L P   GG   + G  G GKTV+ Q L      ++    V+ G GER  E  ++  +            E  V+ +T LV    N P  AR     +G+T+AE FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  + T S +     LD+ +A    +P+++ L S S+
Sbjct:  112 IHRPAPSFAEQAEAIEILETGIKVVDLLVPFAKGGKIGLFGGAGVGKTVLMQELIHNIAKNHGGLSVFAGVGERTREGNDLYYEMA----------ESDVLDKTALVFGQMNEPPGARMRVALSGLTMAEEFRDAFGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAFEMGQLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFSHLDAKVVLDRAIASLGLYPAISPLQSTSR 346          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_THEM4 (ATP synthase subunit beta OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 77/250 (30.80%), Postives = 115/250 (46.00%), Query Frame = 2
Query:    5 RTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            RTP  ++ +  +   L TG +V+D L P   GG     G  G GKTV+   L +     +    ++ G GER  E  E+ +D           +E  V+  T LV    N P  AR     + +T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V A+  P  D +DP  + T + +     L ++ A    +P+V+ L S SK
Sbjct:  117 RTPPSITEQSTSVEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIAIEHHGFSMFAGVGERTREGNELYLDM----------QEAEVLDNTVLVFGQMNEPPGARFRVALSALTMAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITSTK-------KGSITSVQAIYVPADDITDPAPATTFTHLDATVVLSRRRAALGLYPAVDPLDSTSK 349          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 78/247 (31.58%), Postives = 116/247 (46.96%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P    L  +T +  TG +V+D L P + GG   + G  G GKTV+   L       +    V+ G GER  E  ++   + ++T       E  V+ +T LV    N P  AR     TG+T+AE FRD  G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K       +GS+T V AV  P  D +DP  + T S +     L + +A    +P+V+ L S SK
Sbjct:  114 PEFDDLETETEIFETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNIAKGHGGISVFAGVGERTREGRDL---YGEMT-------ESGVITKTALVYGQMNEPPGARLRVALTGLTVAENFRDKDGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPNLATEMGALQERITSTK-------SGSITSVQAVYVPADDLTDPAPATTFSHLDATTVLSRNIASLGIYPAVDPLDSTSK 343          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATW (ATP synthase subunit beta OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 78/246 (31.71%), Postives = 115/246 (46.75%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           ++ +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFAGVGERTREGNDFYYEM----------KDSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATT (ATP synthase subunit beta OS=Francisella tularensis subsp. tularensis GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 78/246 (31.71%), Postives = 115/246 (46.75%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           ++ +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFAGVGERTREGNDFYYEM----------KDSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATM (ATP synthase subunit beta OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 78/246 (31.71%), Postives = 115/246 (46.75%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           ++ +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFAGVGERTREGNDFYYEM----------KDSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRAT1 (ATP synthase subunit beta OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 78/246 (31.71%), Postives = 115/246 (46.75%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           ++ +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFAGVGERTREGNDFYYEM----------KDSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRAP2 (ATP synthase subunit beta OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=atpD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 79/259 (30.50%), Postives = 119/259 (45.95%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFD 781
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           ++ +V+ +  LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+    L   ++ ++
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFAGVGERTREGNDFYYEM----------KDSNVLDKVALVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPLVVGHDHYE 354          
The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_FRATN8.545e-2130.89ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_DICNV8.545e-2130.89ATP synthase subunit beta OS=Dichelobacter nodosus... [more]
ATPB_UREU11.116e-2030.95ATP synthase subunit beta OS=Ureaplasma urealyticu... [more]
ATPB_THEM41.116e-2030.80ATP synthase subunit beta OS=Thermosipho melanesie... [more]
ATPB_FUSNN1.116e-2031.58ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_FRATW1.116e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRATT1.116e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRATM1.116e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRAT11.116e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRAP21.116e-2030.50ATP synthase subunit beta OS=Francisella philomira... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bp
TGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCAC
TGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGT
GGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAG
TCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTT
GTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAA
TTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTAC
AACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTT
CGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTAC
AATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCG
TGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTG
CTTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTT
AAATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGC
AGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCC
TCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGA
AAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCGAAGTATTCAAC
AGCATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACAT
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