FC873260

Overview
NameFC873260
Unique NameFC873260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATO (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           +  +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGERTREGNDFYYEM----------KYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATH (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain LVS) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           +  +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGERTREGNDFYYEM----------KYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATF (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P   +LA  T +L TG +V+D + P   GG   + G  G GKTV    L       +S   V+ G GER  E  +   +           +  +V+ + +LV    N P   R     +G+TIAE FRD   +V M  D+  R+  A  E+S  L  MP+  GY   LAA + +  ER    K       TGS+T V AV  P  D +DP  + T S +     L +++A+   +P+V+ L S S+
Sbjct:  113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGERTREGNDFYYEM----------KYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSC (ATP synthase subunit beta OS=Dehalococcoides sp. (strain CBDB1) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 73/235 (31.06%), Postives = 109/235 (46.38%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            L TG +V+D + P   GG     G  G GKTV+ Q L +     +    V+ G GER  E  ++  +            +  V+ +TT+V    N   A R     TG+T+AEYFRD    +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T   AV  P  D++DP   AT   +     L++ LA++  +P+V+ L S S+
Sbjct:  127 LETGIKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEM----------EDSGVLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSR 344          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSB (ATP synthase subunit beta OS=Dehalococcoides sp. (strain BAV1) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 73/235 (31.06%), Postives = 109/235 (46.38%), Query Frame = 2
Query:   50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            L TG +V+D + P   GG     G  G GKTV+ Q L +     +    V+ G GER  E  ++  +            +  V+ +TT+V    N   A R     TG+T+AEYFRD    +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T   AV  P  D++DP   AT   +     L++ LA++  +P+V+ L S S+
Sbjct:  127 LETGIKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEM----------EDSGVLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSR 344          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_COXBU (ATP synthase subunit beta OS=Coxiella burnetii GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 76/251 (30.28%), Postives = 116/251 (46.22%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            +  P P   + +  T LL TG +V+D L P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E +V+ +  LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+R  +P+++ L S S+
Sbjct:  111 IHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM----------KESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSR 344          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_COXBN (ATP synthase subunit beta OS=Coxiella burnetii (strain Dugway 5J108-111) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 76/251 (30.28%), Postives = 116/251 (46.22%), Query Frame = 2
Query:    2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            +  P P   + +  T LL TG +V+D L P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E +V+ +  LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+R  +P+++ L S S+
Sbjct:  111 IHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM----------KESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSR 344          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CLAMS (ATP synthase subunit beta OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 74/247 (29.96%), Postives = 117/247 (47.37%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P+  +L + T L  TG +V+D L P V GG   + G  G GKTV+ Q + +    D     V+ G GER  E  +++M+            E  V  +T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R  S+T + A+  P  D++DP  + T + +     L +++A R  +P+V+ L S S+
Sbjct:  135 PMFDQLESKTQLFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEMIQRVAQDHGGVSVFAGVGERTREGNDLIMEM----------EEAGVFDKTALVFGQMDEPPGTRLRVALSALTMAEYFRDVKNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGVLQERITST-------RGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSR 364          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CLAM3 (ATP synthase subunit beta OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 74/247 (29.96%), Postives = 117/247 (47.37%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P+  +L + T L  TG +V+D L P V GG   + G  G GKTV+ Q + +    D     V+ G GER  E  +++M+            E  V  +T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R  S+T + A+  P  D++DP  + T + +     L +++A R  +P+V+ L S S+
Sbjct:  135 PMFDQLESKTQLFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEMIQRVAQDHGGVSVFAGVGERTREGNDLIMEM----------EEAGVFDKTALVFGQMDEPPGTRLRVALSALTMAEYFRDVKNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGVLQERITST-------RGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSR 364          
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CHRSD (ATP synthase subunit beta OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20
Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742
            P  ++ AA   LL TG +V+D + P   GG   + G  G GKTV    L +     +S   V+ G GER  E  +   +           +E +V+ + +LV    N P   R     TG+TIAE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T S +     L + +A+   +P+++ L S S+
Sbjct:  112 PSYAEQAASNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEHSGYSVFAGVGERTREGNDFYHEM----------QESNVLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDDGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATVVLARSIAELGIYPAIDPLDSTSR 340          
The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_FRATO5.539e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRATH5.539e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRATF5.539e-2031.71ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_DEHSC5.539e-2031.06ATP synthase subunit beta OS=Dehalococcoides sp. (... [more]
ATPB_DEHSB5.539e-2031.06ATP synthase subunit beta OS=Dehalococcoides sp. (... [more]
ATPB_COXBU5.539e-2030.28ATP synthase subunit beta OS=Coxiella burnetii GN=... [more]
ATPB_COXBN5.539e-2030.28ATP synthase subunit beta OS=Coxiella burnetii (st... [more]
ATPB_CLAMS5.539e-2029.96ATP synthase subunit beta OS=Clavibacter michigane... [more]
ATPB_CLAM35.539e-2029.96ATP synthase subunit beta OS=Clavibacter michigane... [more]
ATPB_CHRSD5.539e-2031.71ATP synthase subunit beta OS=Chromohalobacter sale... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bp
TGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACTCCAC
TGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCTTGGT
GGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTATTAG
TCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTTGGTT
GTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCCTCAA
TTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTAC
AACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAGGCTT
CGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGGGTAC
AATGTTAGCATGATGGCAGATTCAACTTCTCGTTGGGCAGAAGCGTTGCG
TGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTG
CTTACCTGGCTGCACGTTTGGCCTCATTTTATGAACGTGCTGGGAAAGTT
AAATGTCTTGGTGGACCAGAACGTACTGGTAGTGTCACAATTGTTGGTGC
AGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCC
TCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGA
AAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCGAAGTATTCAAC
AGCATTAGAGTCTTTCTATGAGCAATTTGATCCGGATTTTATTAACAT
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