FC873260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATO (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 P +LA T +L TG +V+D + P GG + G G GKTV L +S V+ G GER E + + + +V+ + +LV N P R +G+TIAE FRD +V M D+ R+ A E+S L MP+ GY LAA + + ER K TGS+T V AV P D +DP + T S + L +++A+ +P+V+ L S S+ Sbjct: 113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGERTREGNDFYYEM----------KYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATH (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain LVS) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 P +LA T +L TG +V+D + P GG + G G GKTV L +S V+ G GER E + + + +V+ + +LV N P R +G+TIAE FRD +V M D+ R+ A E+S L MP+ GY LAA + + ER K TGS+T V AV P D +DP + T S + L +++A+ +P+V+ L S S+ Sbjct: 113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGERTREGNDFYYEM----------KYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_FRATF (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 P +LA T +L TG +V+D + P GG + G G GKTV L +S V+ G GER E + + + +V+ + +LV N P R +G+TIAE FRD +V M D+ R+ A E+S L MP+ GY LAA + + ER K TGS+T V AV P D +DP + T S + L +++A+ +P+V+ L S S+ Sbjct: 113 PAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEHSGYSVFSGVGERTREGNDFYYEM----------KYSNVLDKVSLVYGQMNEPPGNRLRVALSGLTIAEGFRDEKRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAAEMGALQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATIVLSRQIAELGIYPAVDPLDSTSR 341
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSC (ATP synthase subunit beta OS=Dehalococcoides sp. (strain CBDB1) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 73/235 (31.06%), Postives = 109/235 (46.38%), Query Frame = 2 Query: 50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 L TG +V+D + P GG G G GKTV+ Q L + + V+ G GER E ++ + + V+ +TT+V N A R TG+T+AEYFRD +V + D+ R+ A E+S L MP+ GY LA + + ER K GS+T AV P D++DP AT + L++ LA++ +P+V+ L S S+ Sbjct: 127 LETGIKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEM----------EDSGVLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSR 344
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSB (ATP synthase subunit beta OS=Dehalococcoides sp. (strain BAV1) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 73/235 (31.06%), Postives = 109/235 (46.38%), Query Frame = 2 Query: 50 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 L TG +V+D + P GG G G GKTV+ Q L + + V+ G GER E ++ + + V+ +TT+V N A R TG+T+AEYFRD +V + D+ R+ A E+S L MP+ GY LA + + ER K GS+T AV P D++DP AT + L++ LA++ +P+V+ L S S+ Sbjct: 127 LETGIKVIDLIAPFARGGKIGALGGAGVGKTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEM----------EDSGVLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSR 344
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_COXBU (ATP synthase subunit beta OS=Coxiella burnetii GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 76/251 (30.28%), Postives = 116/251 (46.22%), Query Frame = 2 Query: 2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 + P P + + T LL TG +V+D L P GG + G G GKTV L + +S V+ G GER E + + +E +V+ + LV N P R TG+T+AE FRD G +V + D+ R+ A E+S L MP+ GY LA + + ER K GS+T + AV P D +DP + T + + L +++A+R +P+++ L S S+ Sbjct: 111 IHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM----------KESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSR 344
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_COXBN (ATP synthase subunit beta OS=Coxiella burnetii (strain Dugway 5J108-111) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 76/251 (30.28%), Postives = 116/251 (46.22%), Query Frame = 2 Query: 2 VRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 + P P + + T LL TG +V+D L P GG + G G GKTV L + +S V+ G GER E + + +E +V+ + LV N P R TG+T+AE FRD G +V + D+ R+ A E+S L MP+ GY LA + + ER K GS+T + AV P D +DP + T + + L +++A+R +P+++ L S S+ Sbjct: 111 IHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM----------KESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSR 344
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CLAMS (ATP synthase subunit beta OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 74/247 (29.96%), Postives = 117/247 (47.37%), Query Frame = 2 Query: 17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 P+ +L + T L TG +V+D L P V GG + G G GKTV+ Q + + D V+ G GER E +++M+ E V +T LV + P R + +T+AEYFRD+ +V + D+ R+ +A E+S L MP+ GY LA + ER R S+T + A+ P D++DP + T + + L +++A R +P+V+ L S S+ Sbjct: 135 PMFDQLESKTQLFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEMIQRVAQDHGGVSVFAGVGERTREGNDLIMEM----------EEAGVFDKTALVFGQMDEPPGTRLRVALSALTMAEYFRDVKNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGVLQERITST-------RGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSR 364
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CLAM3 (ATP synthase subunit beta OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 74/247 (29.96%), Postives = 117/247 (47.37%), Query Frame = 2 Query: 17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 P+ +L + T L TG +V+D L P V GG + G G GKTV+ Q + + D V+ G GER E +++M+ E V +T LV + P R + +T+AEYFRD+ +V + D+ R+ +A E+S L MP+ GY LA + ER R S+T + A+ P D++DP + T + + L +++A R +P+V+ L S S+ Sbjct: 135 PMFDQLESKTQLFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEMIQRVAQDHGGVSVFAGVGERTREGNDLIMEM----------EEAGVFDKTALVFGQMDEPPGTRLRVALSALTMAEYFRDVKNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGVLQERITST-------RGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSR 364
BLAST of FC873260 vs. ExPASy Swiss-Prot
Match: ATPB_CHRSD (ATP synthase subunit beta OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=atpD PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.539e-20 Identity = 78/246 (31.71%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 17 PVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 742 P ++ AA LL TG +V+D + P GG + G G GKTV L + +S V+ G GER E + + +E +V+ + +LV N P R TG+TIAE FRD G +V + D+ R+ A E+S L MP+ GY LA + ER K TGS+T V AV P D +DP + T S + L + +A+ +P+++ L S S+ Sbjct: 112 PSYAEQAASNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEHSGYSVFAGVGERTREGNDFYHEM----------QESNVLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDDGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATVVLARSIAELGIYPAIDPLDSTSR 340 The following BLAST results are available for this feature:
BLAST of FC873260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873260 ID=FC873260; Name=FC873260; organism=Citrus clementina; type=EST; length=798bpback to top |