FC873262

Overview
NameFC873262
Unique NameFC873262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10140 contig Ccv1_Contig10140:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: COQ3_MOUSE (Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial OS=Mus musculus GN=Coq3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.002e-21
Identity = 50/128 (39.06%), Postives = 80/128 (62.50%), Query Frame = 2
Query:   23 EKLVEEQRK-FDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFIAFGTKN 403
            E+ V+E  + FDAV+ASEV+EHV+    F +    +    G+  I+T+N++  +YA  I+ AE I   +PKGTH W  F++PE+L  IL+   + V+ +AG VYNP +G W  S++ S+N+ A   ++
Sbjct:  207 EEAVDESAECFDAVVASEVVEHVSHLEMFIQCCYQVLKPGGSLFITTVNKTQLSYALGIVFAEQIAGIVPKGTHTWEKFVSPEKLESILEPNGLSVETVAGLVYNPFSGYWHWSENTSLNYAAHAVRS 334          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_SACD2 (3-demethylubiquinone-9 3-methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ubiG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.839e-21
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:   23 EKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSL-SDDISVNFIAFGTK 400
            E   +  + +D V   E++EHV DPA+   + + L    G    STINR+ +AY  A++ AE++L  LPKGTH ++ F+ P EL   ++ A ++++EM G  YNP+T  + L + D+SVN+I    K
Sbjct:  109 EFAAKHPQSYDVVTCLEMLEHVPDPAQTIAACAQLVKPGGDIFFSTINRNPKAYLFAVVGAEYVLKMLPKGTHDYNKFIRPSELAQWMRNAGLELQEMCGMTYNPITKHYKLNAKDVSVNYIMHARK 235          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_HAES2 (3-demethylubiquinone-9 3-methyltransferase OS=Haemophilus somnus (strain 2336) GN=ubiG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.839e-21
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 2
Query:   47 KFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFIA 388
            KFD +   E++EHV DP    +S  AL    G    STINR+ +A+A  ++ AE+IL  LPKGTH +  F+ P EL+    +A++  K + G+ YN LTG++ L+ D+S N++A
Sbjct:  118 KFDVITCMEMLEHVPDPLSIIQSCRALLKPNGVLFFSTINRTFKAWALVVLGAEYILKMLPKGTHDYDKFIKPAELLHWTDQANLVCKNICGYHYNLLTGKFWLNQDVSANYMA 231          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_DECAR (3-demethylubiquinone-9 3-methyltransferase OS=Dechloromonas aromatica (strain RCB) GN=ubiG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.839e-21
Identity = 48/122 (39.34%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   23 EKLVEEQR-KFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 385
            E+L E+   +FDAV   E++EHV +P+    + + L    G   +ST+NR+ ++Y  A+I AE++L  LPKGTH ++ F+ P EL    + A+++ +E+ G  YNPLT ++SL  D SVN++
Sbjct:  104 EELAEQMPGEFDAVTCLEMLEHVPNPSSVITACARLVKPGGQVFLSTLNRNPKSYLFAVIGAEYVLQMLPKGTHDYARFIKPSELARWAKMANLEPEELVGMSYNPLTKKYSLGKDTSVNYL 225          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_NITMU (3-demethylubiquinone-9 3-methyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=ubiG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.337e-20
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   35 EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 385
            E+   +D V   E++EHV DP    ++ + L    G    STINR+ ++Y  A+I AE++L+ LP+GTH ++ F+ P EL  + + A +DV+E+ G  YNP+T  +SL  D  VN+I
Sbjct:  118 EQPHHYDVVTCMEMLEHVPDPVSTVRACAELAKPGGWVFFSTINRNPKSYLFAVIGAEYVLNLLPRGTHDYAKFIKPSELGRMAREAGLDVQEVIGMSYNPITKVYSLGQDTDVNYI 234          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_LEPCP (3-demethylubiquinone-9 3-methyltransferase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.337e-20
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 2
Query:   35 EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 385
            E+  ++D V   E++EHV DPA   ++ S L    G   +STINR+ +++  AI+ AE++L  LP GTH+++ F+ P EL+   +   +D++   G  YNPLT R+ LS D SVN++
Sbjct:  111 EQPARYDVVTCMEMVEHVPDPASIVQACSQLVKPGGWVFLSTINRNPKSFLLAIVGAEYVLKMLPAGTHEYAKFIRPSELLRWCRDTGLDLRHTRGMEYNPLTRRYWLSADTSVNYL 227          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_HAEPS (3-demethylubiquinone-9 3-methyltransferase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=ubiG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.337e-20
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 2
Query:   32 VEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFIA 388
            + +  KFD +   EV+EHV +P    +S   L   +G   ISTINR+ +AY   II AE++L  LPKGTH +  F+ P EL+    +   + KE+ G+ +NPLT  + ++ DI+ N+IA
Sbjct:  113 ITDTEKFDIITCMEVLEHVPNPHSIIQSCKNLLKEDGLLFISTINRTAKAYMLIIIGAEYVLKMLPKGTHNFEKFIKPSELLRWCSQEDFECKEIVGYHFNPLTKNFWINKDINCNYIA 231          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_BORPE (3-demethylubiquinone-9 3-methyltransferase OS=Bordetella pertussis GN=ubiG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.337e-20
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   11 IPWTEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 385
            +P  E   E+  ++D V   E++EHV DPA   ++ +AL    G    ST+NR+ +++  AI+ AE++L  LP+GTH + SF+ P EL    ++A ++   M G  YNP+T  +SLS + SVN++
Sbjct:  112 VPVEELAAEQPGQYDVVTCMEMLEHVPDPASVVRACAALAKPGGWVFFSTLNRNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELATSARQAGLEPTGMRGMEYNPITQVYSLSANTSVNYL 236          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_BORBR (3-demethylubiquinone-9 3-methyltransferase OS=Bordetella bronchiseptica GN=ubiG PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.337e-20
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   11 IPWTEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 385
            +P  E   E+  ++D V   E++EHV DPA   ++ +AL    G    ST+NR+ +++  AI+ AE++L  LP+GTH + SF+ P EL    ++A ++   M G  YNP+T  +SLS + SVN++
Sbjct:  112 VPVEELATEQPGQYDVVTCMEMLEHVPDPASVVRACAALAKPGGWVFFSTLNRNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELAASARQAGLEPTGMRGMEYNPITQVYSLSANTSVNYL 236          
BLAST of FC873262 vs. ExPASy Swiss-Prot
Match: UBIG_PSESM (3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas syringae pv. tomato GN=ubiG PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.746e-20
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 2
Query:   23 EKLVEEQ-RKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSVRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 385
            E L EE   +FD V   E++EHV DP+   ++   +    G    STINR+ +AY  A++ AE+IL+ LP+GTH +  F+ P EL    + A + VK++ G  YNPLT  + L+ D+ VN++
Sbjct:  104 EDLAEEMPEQFDVVTCLEMLEHVPDPSSVIRACHRMVKPGGQVFFSTINRNPKAYLFAVVGAEYILNLLPRGTHDFKKFIRPSELGAWSRDAGLQVKDIIGLTYNPLTKHYKLASDVDVNYM 225          
The following BLAST results are available for this feature:
BLAST of FC873262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
COQ3_MOUSE6.002e-2139.06Hexaprenyldihydroxybenzoate methyltransferase, mit... [more]
UBIG_SACD27.839e-2137.803-demethylubiquinone-9 3-methyltransferase OS=Sacc... [more]
UBIG_HAES27.839e-2141.233-demethylubiquinone-9 3-methyltransferase OS=Haem... [more]
UBIG_DECAR7.839e-2139.343-demethylubiquinone-9 3-methyltransferase OS=Dech... [more]
UBIG_NITMU1.337e-2039.323-demethylubiquinone-9 3-methyltransferase OS=Nitr... [more]
UBIG_LEPCP1.337e-2039.323-demethylubiquinone-9 3-methyltransferase OS=Lept... [more]
UBIG_HAEPS1.337e-2039.503-demethylubiquinone-9 3-methyltransferase OS=Haem... [more]
UBIG_BORPE1.337e-2037.603-demethylubiquinone-9 3-methyltransferase OS=Bord... [more]
UBIG_BORBR1.337e-2037.603-demethylubiquinone-9 3-methyltransferase OS=Bord... [more]
UBIG_PSESM1.746e-2039.343-demethylubiquinone-9 3-methyltransferase OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BA01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873262 ID=FC873262; Name=FC873262; organism=Citrus clementina; type=EST; length=507bp
CATAAATATAATTCCATGGACAGAGAAGCTCGTAGAGGAACAGAGGAAGT
TCGATGCTGTGATTGCTTCAGAGGTAATTGAGCATGTAGCAGATCCTGCT
GAATTCTGCAAGTCTTTGTCTGCATTAACCGTATCTGAGGGAGCTACAGT
GATTTCAACAATAAATCGTTCTGTGAGAGCATATGCAACTGCCATCATTG
CAGCAGAACACATCCTCCATTGGCTTCCAAAAGGTACACATCAGTGGTCA
AGTTTCCTTACTCCCGAAGAGCTCGTGCTAATTCTACAACGTGCTTCCAT
AGATGTTAAAGAGATGGCTGGATTTGTGTACAATCCTTTAACAGGAAGAT
GGTCTCTATCCGATGACATTAGTGTGAACTTCATCGCTTTTGGTACCAAA
AATAGCTAGTAACAGATAAACTCTTCTGTAGTAACACTCTCTCTAATGCA
GCTAATGCTGTGTAATAAATTTTGCTCCCAATCATTTAAAAAAAAAAAAA
AAAAAAA
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