FC873271

Overview
NameFC873271
Unique NameFC873271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..795. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_SINMW (ATP synthase subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=atpD PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.953e-58
Identity = 120/181 (66.30%), Postives = 139/181 (76.80%), Query Frame = 3
Query:  234 KKGGGGKITDEFT---GKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            KK    K     T     G++G+V QVIGAVVDV F+EG LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ+V +TG+PI VPVG+ TLGRIMNVIGEP+DE G LKT     IH++APA+V+Q+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:   20 KKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 200          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.953e-58
Identity = 113/159 (71.07%), Postives = 131/159 (82.39%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G++  VIGAVVDV+FD+ LPPIL ALEV + S RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TG PI +PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:   38 GKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 196          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHIE6 (ATP synthase subunit beta OS=Rhizobium etli (strain CIAT 652) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.449e-58
Identity = 115/161 (71.43%), Postives = 133/161 (82.61%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S+G+V QVIGAVVDV F+  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD +EGLVRGQ+V++TG+PI+VPVG  TLGRIMNVIGEP+DE G L T H   IH++APA+VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGK  L+  L
Sbjct:    8 SVGKVTQVIGAVVDVAFEGELPAILNALETDNNGNRLVLEVAQHLGENEVRTIAMDSSEGLVRGQQVIDTGAPISVPVGDETLGRIMNVIGEPVDEAGPLNTAHKRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMEL 168          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHORU (ATP synthase subunit beta OS=Rhodospirillum rubrum GN=atpD PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 111/163 (68.10%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            K ++G + QV GAVVDV+F+  LP IL+ALE  +H  RLVLEVAQH+GE VVRTIAMD TEGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGK  L+  L
Sbjct:    3 KNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQEL 165          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHORT (ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 111/163 (68.10%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            K ++G + QV GAVVDV+F+  LP IL+ALE  +H  RLVLEVAQH+GE VVRTIAMD TEGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGK  L+  L
Sbjct:    3 KNNLGTITQVTGAVVDVKFEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQEL 165          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_HYPNA (ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 111/159 (69.81%), Postives = 129/159 (81.13%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G++ QVIGAVVDV FD  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V + G+PITVPVG  TLGRIMNVIGEPIDE+G +  + Y+PIH +APAFV+QATE ++LVTGIKV+DLL PY +GGKIGLFGGAGVGK  L+  L
Sbjct:    9 GRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIAMDSTEGLVRGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMEL 167          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS4 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 115/161 (71.43%), Postives = 129/161 (80.12%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S G+V QVIGAVVDV+FD GLPPIL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG RV +TGSPI+VPVG  TLGRI+NVIGEPIDEKGDL       IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    5 SQGKVTQVIGAVVDVQFDGGLPPILNALETENNGKRLVLEVAQHLGESTVRTIAMDATEGLVRGARVTDTGSPISVPVGDATLGRILNVIGEPIDEKGDLGEASTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMEL 165          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS1 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 115/161 (71.43%), Postives = 129/161 (80.12%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S G+V QVIGAVVDV+FD GLPPIL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG RV +TGSPI+VPVG  TLGRI+NVIGEPIDEKGDL       IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    5 SQGKVTQVIGAVVDVQFDGGLPPILNALETENNGKRLVLEVAQHLGESTVRTIAMDATEGLVRGARVTDTGSPISVPVGDATLGRILNVIGEPIDEKGDLGEASTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMEL 165          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.882e-57
Identity = 119/178 (66.85%), Postives = 137/178 (76.97%), Query Frame = 3
Query:  234 KKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            KK    K T      G++G+V QVIGAVVDV F+EG LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG PI+VPVG+ TLGRIMNVIGEP+DE G ++T     IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:   20 KKAATAKTT-AVVATGAVGRVTQVIGAVVDVAFEEGQLPQILNALETDNKGNRLVLEVAQHLGENAVRTIAMDSTEGLVRGQSVTDTGGPISVPVGKETLGRIMNVIGEPVDEAGPVETSSRRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 196          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHIEC (ATP synthase subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.882e-57
Identity = 114/161 (70.81%), Postives = 133/161 (82.61%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S+G+V QVIGAVVDV F+  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD +EGLVRGQ+V++TG+PI+VPVG  TLGRIMNVIGEP+DE G L T H   IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    8 SVGKVTQVIGAVVDVAFEGELPAILNALETDNNGNRLVLEVAQHLGENEVRTIAMDSSEGLVRGQQVIDTGAPISVPVGDETLGRIMNVIGEPVDEAGPLNTAHKRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 168          
The following BLAST results are available for this feature:
BLAST of FC873271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SINMW4.953e-5866.30ATP synthase subunit beta OS=Sinorhizobium medicae... [more]
ATPB_DROME4.953e-5871.07ATP synthase subunit beta, mitochondrial OS=Drosop... [more]
ATPB_RHIE68.449e-5871.43ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB_RHORU1.103e-5768.10ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_RHORT1.103e-5768.10ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_HYPNA1.103e-5769.81ATP synthase subunit beta OS=Hyphomonas neptunium ... [more]
ATPB1_RHOS41.103e-5771.43ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB1_RHOS11.103e-5771.43ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB_RHISN1.882e-5766.85ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]
ATPB_RHIEC1.882e-5770.81ATP synthase subunit beta OS=Rhizobium etli (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873271 ID=FC873271; Name=FC873271; organism=Citrus clementina; type=EST; length=784bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAACTGTGCT
TATTATGGAACTTATAACAATGTTGCAAGGCTCA
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