FC873271

Overview
NameFC873271
Unique NameFC873271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..795. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.948e-54
Identity = 109/159 (68.55%), Postives = 127/159 (79.87%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGLGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 167          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.948e-54
Identity = 110/165 (66.67%), Postives = 126/165 (76.36%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            T  G IG V QVIGAVVDV+F E LP IL ALE  +   RLVLEVAQH+GE  VR IAMD T+GLVRGQ V +TG+PI+VPVG   LGRI+NVIGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGVGK  L+  L
Sbjct:   46 TASGKIGSVRQVIGAVVDVQFQENLPAILNALETDNQGNRLVLEVAQHLGENTVRCIAMDSTDGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQEL 210          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB1_BRASB (ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.948e-54
Identity = 109/165 (66.06%), Postives = 129/165 (78.18%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            T    IG++ QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K +    IH+EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    3 TAANQIGRITQVIGAVVDVQFEGHLPAILNSLETKNAGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADSLRAIHQEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 167          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_ROSDO (ATP synthase subunit beta OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpD PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.544e-54
Identity = 105/161 (65.22%), Postives = 127/161 (78.88%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            ++G++ QVIGAVVDV+F + LP IL ALE  ++  RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +T  PI++PVG  TLGRIMNV+GEPIDEKG + T+    IH+EAPAF EQ+T  ++L TGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 AVGKITQVIGAVVDVQFADHLPEILNALETNNNGNRLVLEVAQHLGENTVRAIAMDATEGLVRGQTVTDTDGPISIPVGNATLGRIMNVVGEPIDEKGPVATDETRSIHQEAPAFAEQSTSSEVLETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 164          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.544e-54
Identity = 110/165 (66.67%), Postives = 127/165 (76.97%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            T     G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGIGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 167          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_ZYMMO (ATP synthase subunit beta OS=Zymomonas mobilis GN=atpD PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.323e-54
Identity = 103/165 (62.42%), Postives = 130/165 (78.79%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            + K +IG++ QVIG VVDV F+E LPP+LTALE  +    +VLEVAQH+GE VVRTI+MD T+GLVRGQ V++TGS I VPVG  TLGRIMNV+G P+DE+G + ++  +PIH +AP F EQ+T+  IL TGIKV+DLLAPY +GGK+GLFGGAGVGK  L+  L
Sbjct:    5 SSKKNIGRISQVIGPVVDVLFEEKLPPLLTALETKNQDATVVLEVAQHLGENVVRTISMDTTDGLVRGQEVVDTGSEIRVPVGPETLGRIMNVVGRPVDERGPIGSKQTMPIHADAPPFTEQSTDTAILTTGIKVIDLLAPYSKGGKVGLFGGAGVGKTVLIQEL 169          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.323e-54
Identity = 110/159 (69.18%), Postives = 127/159 (79.87%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRI+NVIGEPIDE G +K+E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    6 GRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 164          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_BARBK (ATP synthase subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpD PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.323e-54
Identity = 105/163 (64.42%), Postives = 129/163 (79.14%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            KG++G++ QVIGA+VDV+F+  LP IL ALE      RL+LEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I VPVG  TLGRIMNVIGEP+DE G + T     IH++AP ++EQ+TE +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK  L+  L
Sbjct:   60 KGAVGEIKQVIGAIVDVQFEGALPNILNALETDRLGSRLILEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQICVPVGEATLGRIMNVIGEPVDEVGPIVTTKTRSIHQKAPEYIEQSTESEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMEL 222          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.339e-54
Identity = 109/165 (66.06%), Postives = 128/165 (77.58%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            T     G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAVETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 167          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.339e-54
Identity = 109/165 (66.06%), Postives = 127/165 (76.97%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            T     G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 167          
The following BLAST results are available for this feature:
BLAST of FC873271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOP51.948e-5468.55ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_MESSB1.948e-5466.67ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB1_BRASB1.948e-5466.06ATP synthase subunit beta 1 OS=Bradyrhizobium sp. ... [more]
ATPB_ROSDO2.544e-5465.22ATP synthase subunit beta OS=Roseobacter denitrifi... [more]
ATPB_RHOPS2.544e-5466.67ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_ZYMMO3.323e-5462.42ATP synthase subunit beta OS=Zymomonas mobilis GN=... [more]
ATPB_BRAJA3.323e-5469.18ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_BARBK3.323e-5464.42ATP synthase subunit beta OS=Bartonella bacillifor... [more]
ATPB_RHOPB4.339e-5466.06ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP24.339e-5466.06ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873271 ID=FC873271; Name=FC873271; organism=Citrus clementina; type=EST; length=784bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAACTGTGCT
TATTATGGAACTTATAACAATGTTGCAAGGCTCA
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