FC873271

Overview
NameFC873271
Unique NameFC873271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..795. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_CAUCR (ATP synthase subunit beta OS=Caulobacter crescentus GN=atpD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.229e-50
Identity = 100/165 (60.61%), Postives = 125/165 (75.76%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +G+ G++ Q+IGAVVD+ FD  LP IL A+E V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGEPIDE+G ++++    IHR+AP+F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGVGK   +  L
Sbjct:   61 EGATGRLVQIIGAVVDIEFDGALPAILNAVETVNTATGQRLVFEVAQHLGQSTVRAIAMDATEGLVRGQPVRDTGEPIRVPVGPGTLGRIMNVIGEPIDEQGPIRSDISRTIHRDAPSFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQEL 225          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RICPU (ATP synthase subunit beta OS=Rickettsia peacockii (strain Rustic) GN=atpD PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.801e-50
Identity = 101/163 (61.96%), Postives = 124/163 (76.07%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 NIGKITQIISAVVDVKFTNNSELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RICRS (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.965e-50
Identity = 101/163 (61.96%), Postives = 125/163 (76.69%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +IG++ Q+I AVVDV+F     LP IL ALE  + + R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 NIGKITQIISAVVDVKFTNNGKLPEILNALECYNDTRRVVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RICRO (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Iowa) GN=atpD PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.965e-50
Identity = 101/163 (61.96%), Postives = 125/163 (76.69%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +IG++ Q+I AVVDV+F     LP IL ALE  + + R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 NIGKITQIISAVVDVKFTNNGKLPEILNALECYNDTRRVVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RICPR (ATP synthase subunit beta OS=Rickettsia prowazekii GN=atpD PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.965e-50
Identity = 101/163 (61.96%), Postives = 125/163 (76.69%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 NIGKITQVISAVVDVKFTNNGKLPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLIRGLEVIDTGNPIRIPVGTETLGRIMNVVGEPIDGKGEIKSATISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RICAE (ATP synthase subunit beta OS=Rickettsia africae (strain ESF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.965e-50
Identity = 101/163 (61.96%), Postives = 124/163 (76.07%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPEILNALECYNDKHRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_GEOBB (ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.469e-50
Identity = 104/167 (62.28%), Postives = 122/167 (73.05%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            + G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+NVIGEP+DE G +  E    IHREAP FV Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGK  L+  L
Sbjct:    4 NFGKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPLFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMEL 170          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.106e-49
Identity = 101/163 (61.96%), Postives = 123/163 (75.46%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.106e-49
Identity = 96/164 (58.54%), Postives = 124/164 (75.61%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            +G++G++ Q+IG V+D+RF  E LP +L A+E+     ++V+EV+QH+G+  VR +AM  T+GLVRG    +TG PITVPVGR TLGRI NVIGEP+DEKG +  E   PIHR AP+F +QAT  +IL TGIKVVDL+APY +GGKIGLFGGAGVGK  L+  L
Sbjct:    3 EGNVGKLVQIIGPVIDIRFSRENLPNLLNAIEIEGPDGKIVVEVSQHIGDDTVRCVAMKSTDGLVRGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMEL 166          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_MARMM (ATP synthase subunit beta OS=Maricaulis maris (strain MCS10) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.445e-49
Identity = 103/161 (63.98%), Postives = 117/161 (72.67%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S G++ Q+ GAVVDV FD  LP IL ALE  +    L LEVAQH+GE  VRTIAMD TEGL RG  V +TG PI VPVG  TLGRIM+V G+PIDE GD+      PIHR AP+F EQATE ++L TGIKVVDLL PY +GGKIGLFGGAGVGK  L+  L
Sbjct:    4 SQGRIVQITGAVVDVEFDGTLPDILNALETTNDDKTLTLEVAQHLGENTVRTIAMDATEGLQRGTVVTDTGGPIMVPVGPGTLGRIMSVTGQPIDEAGDVPHTMKAPIHRPAPSFDEQATEAEVLPTGIKVVDLLCPYAKGGKIGLFGGAGVGKTVLIQEL 164          
The following BLAST results are available for this feature:
BLAST of FC873271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CAUCR2.229e-5060.61ATP synthase subunit beta OS=Caulobacter crescentu... [more]
ATPB_RICPU3.801e-5061.96ATP synthase subunit beta OS=Rickettsia peacockii ... [more]
ATPB_RICRS4.965e-5061.96ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICRO4.965e-5061.96ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICPR4.965e-5061.96ATP synthase subunit beta OS=Rickettsia prowazekii... [more]
ATPB_RICAE4.965e-5061.96ATP synthase subunit beta OS=Rickettsia africae (s... [more]
ATPB_GEOBB8.469e-5062.28ATP synthase subunit beta OS=Geobacter bemidjiensi... [more]
ATPB_RICCN1.106e-4961.96ATP synthase subunit beta OS=Rickettsia conorii GN... [more]
ATPB_ALKOO1.106e-4958.54ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_MARMM1.445e-4963.98ATP synthase subunit beta OS=Maricaulis maris (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873271 ID=FC873271; Name=FC873271; organism=Citrus clementina; type=EST; length=784bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAACTGTGCT
TATTATGGAACTTATAACAATGTTGCAAGGCTCA
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