FC873277

Overview
NameFC873277
Unique NameFC873277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 3
Query:   72 QGDALFALRTSLRVPNNQLRDWNQ-NQVNPCTWSNVICDN-SNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +G AL A++ S     N L DW+  +  + C+W  V CDN S NV S+ LS++N  G +S  +G L  L ++ L+GN + G+IP+E+GN  SL  +D   N L G IP S+  LK+L+FL
Sbjct:   31 EGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFL 150          

HSP 2 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  198 VASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            +A + LS    +G + P +G L     L L GN +TG+IP ELGN+S L+ L L +N LVGKIPP LG L++L
Sbjct:  290 LAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQL 362          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  108 RVPNNQLRDW--NQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            RVP      W  N ++  PC W  + CD+S NVAS+  +    SG L P IG L++L  L L  N  +G IP  LGN + L +LDL  N    KIP +L +LK+L+ L
Sbjct:   45 RVPPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVL 152          

HSP 2 Score: 71.633 bits (174), Expect = 5.203e-12
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N +++ ++ + S N SGT+   +G+L+ L+ L L  N ++G IP ELGN SSL  L L +N+LVG IP +LG L+KL+ L
Sbjct:  289 NCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESL 368          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.149e-17
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   45 FAYLALSDYQGDALFAL-RTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +A  AL+   G AL +L R    +P++  + WN +   PC+W  V CD    V ++ LSS   SG   P I  L+ L  + L GNG  G IP +LGN S L  +DL +N   G IP +LG L+ L+ L
Sbjct:   19 YAAFALNS-DGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNL 145          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 46/120 (38.33%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   81 ALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVIC-----DNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            AL  +   L+ P N L+DW +       W+ VIC     D   +V  + L +MN +G L+P +G+L  L+ L    N +TG+IP ELGNL+ L  L L  N+L G +P  LG+L  L  L
Sbjct:   35 ALQYVHRKLKDPLNHLQDWKKTDPCASNWTGVICIPDPSDGFLHVKELRLLNMNLTGQLAPELGLLSNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLIL 154          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 3
Query:   81 ALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSN------NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            AL  ++ SL  P ++LR+W         W+ V+C NS       +V+ + L SMN SG LSP +G L  L+ L+   N ITG IP+E+GN+ SL  L L  N L G +P  LG L  L
Sbjct:   40 ALRVIKESLNDPVHRLRNWKHGDPCNSNWTGVVCFNSTLDDGYLHVSELQLFSMNLSGNLSPELGRLSRLTILSFMWNKITGSIPKEIGNIKSLELLLLNGNLLNGNLPEELGFLPNL 157          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   15 LVLVAIILDCFAYLA---LSDYQGDALFALRTSLRVPNNQ----LRDWNQNQVNPCTWSNVICDNS--------------------------NNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            LVL+ + + CF+ L    + +     L  ++ SL V N Q    LR WN + +N C+W+ V CDN+                          +N+  + LSS N  G +   +  L +L +L L  N +TGEIP +LG+L ++ SL + +N LVG IP +LGNL  LQ L
Sbjct:    4 LVLLLLFILCFSGLGQPGIINNDLQTLLEVKKSL-VTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQML 172          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.146e-15
Identity = 53/148 (35.81%), Postives = 74/148 (50.00%), Query Frame = 3
Query:   15 LVLVAIILDCFAYLALSDYQ-----GDALFALRTSL-RVPNNQLRDWNQN--QVNPCT--WSNVICDNSNNVA-SVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L+ + ++   F Y  +         G AL +L     +VP      W +N  +  PC   W  VICD S NV  ++ LS+   SG L   IG L++L TL L  N  +G +P  LGN +SL  LDL NN   G++P   G+L+ L FL
Sbjct:    6 LLEITLLCSLFVYFRIDSVSSLNSDGLALLSLLKHFDKVPLEVASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFL 153          

HSP 2 Score: 22.7126 bits (47), Expect = 2.146e-15
Identity = 14/52 (26.92%), Postives = 18/52 (34.62%), Query Frame = 1
Query:  538 LSQNNFSGTIPXXXXXXXXXXXXXXXXXXXXGQIPVHLFQIPKYN--FTGNN 687
            +S NN SGTIP                    G +P  L+ +      F  NN
Sbjct:  179 MSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNN 230          

HSP 3 Score: 74.7146 bits (182), Expect = 6.146e-13
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N +++ S+ +   N +GT+   +G+LR +S + L  N ++G IP+ELGN SSL +L L +N+L G+IPP+L  LKKLQ L
Sbjct:  266 NCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSL 345          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 46/108 (42.59%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  120 NQLRDWNQNQVNPCTWSNVICD--------NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 419
            N+L +WN     PC W  V C         NS  V S+ LSSMN SG +SP IG L  L  L L  N +TG+IP E+GN S L  + L NN+  G IP  +  L +L+
Sbjct:   53 NRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLR 160          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 44/139 (31.65%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   24 VAIILDCFAYLALSDYQGDALFALRTSLRV----PNNQLRDWNQNQVNPCTWSNVICDNS-NNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +A++L  F +++   +  + + ALR         P   + +WN    +PC W+ + C  S ++V  + +S+ +  G L+P +G +  L  L L GN + G IP+E+GNL +L  LDL NN L+G IP  +G+L  +  +
Sbjct:    9 LALVLGLF-FVSCDGFASNEVQALRRFKEAIYEDPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMII 146          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   21 LVAIILDCFAYLALS---DYQGDALFALRTSLRVPNNQLRDWN-----QNQVNPCTWSNVICDN-SNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 419
            L+ ++L  FA+ +L+     Q  +L +L+TSL  P +  +DW      QN    C+WS V+CDN +  V S+ LS  N SG +  +I  L +L  L L GN + G  P  + +L+ LT+LD+  N      PP +  LK L+
Sbjct:   15 LLLLLLPFFAFNSLALKFSPQLLSLLSLKTSLSGPPSAFQDWKVPVNGQNDAVWCSWSGVVCDNVTAQVISLDLSHRNLSGRIPIQIRYLSSLLYLNLSGNSLEGSFPTSIFDLTKLTTLDISRNSFDSSFPPGISKLKFLK 156          
The following BLAST results are available for this feature:
BLAST of FC873277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ERL2_ARATH7.496e-1941.67LRR receptor-like serine/threonine-protein kinase ... [more]
PEPR1_ARATH2.411e-1741.67Leucine-rich repeat receptor-like protein kinase P... [more]
RPK1_IPONI3.149e-1739.06Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
Y5374_ARATH1.323e-1538.33Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH1.323e-1540.68Probable LRR receptor-like serine/threonine-protei... [more]
GSO1_ARATH1.728e-1533.53LRR receptor-like serine/threonine-protein kinase ... [more]
PEPR2_ARATH2.146e-1535.81Leucine-rich repeat receptor-like protein kinase P... [more]
Y2317_ARATH5.028e-1542.59Probable leucine-rich repeat receptor-like protein... [more]
Y1634_ARATH5.028e-1531.65Probable LRR receptor-like serine/threonine-protei... [more]
Y5148_ARATH8.577e-1535.21Probable leucine-rich repeat receptor-like protein... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873277 ID=FC873277; Name=FC873277; organism=Citrus clementina; type=EST; length=766bp
TGAATAGCGTGAAGTTGGTCCTTGTTGCTATAATATTGGATTGCTTCGCT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTACCAATGATTCAGGGAGTTCA
AAAAACCCAAGATTGG
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