FC873277

Overview
NameFC873277
Unique NameFC873277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.488e-12
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 3
Query:   18 VLVAIILDCFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGN-GITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            +L+ +    ++  A +D  G    AL+      +   + W  +      W  + C+N N V S++L++ N  G L   I  L  L TL L GN  ++G +P  +GNL  LT L L      G IP S+GNL++L
Sbjct:   12 LLILLFFQIYSVYAFTD--GSDFTALQALKNEWDTLSKSWKSSDPCGTEWVGITCNNDNRVVSISLTNRNLKGKLPTEISTLSELQTLDLTGNPELSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIGNLEQL 143          

HSP 2 Score: 21.557 bits (44), Expect = 1.488e-12
Identity = 16/63 (25.40%), Postives = 23/63 (36.51%), Query Frame = 1
Query:  535 TLSQNNFSGTIPXXXXXXXXXXXXXXXXXXXXGQIPVH----------LFQIPKYNFTGNNLN 693
            +L+ N FSGTIP                    G++PV           L Q   ++F  N L+
Sbjct:  147 SLNLNKFSGTIPASMGRLSKLYWFDIADNQLEGKLPVSDGASLPGLDMLLQTGHFHFGNNKLS 209          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 45/139 (32.37%), Postives = 63/139 (45.32%), Query Frame = 3
Query:   75 GDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICD-NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGI------------------------TGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            G+AL + R ++   ++ +  W     +PC W+ V CD  +  V ++ L+     G L P IG L  L  L L  N +                        TG IP E+G+L  L  LD+ +N L G IP SLG LKKL
Sbjct:   34 GEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKL 172          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.050e-12
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 3
Query:  114 PNNQLRDWNQ-NQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            P   L DW     +  C W+ + CD++ +V SV+L      G LSP I  L  L  L L  N  TG+IP E+G L+ L  L L  N   G IP  +  LK + +L
Sbjct:   45 PLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYL 149          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y1571_ARATH (Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 3
Query:   15 LVLVAIILDCFAYLALSDYQGDALFALRTSLRVPNNQLRDW----NQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLS--PRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L+ ++IIL C    + +  + +AL   +++    +++L  W    N N    CT W  V C++  ++  + L++    GT    P I  L  L+ + L  N ++G IP + GNLS L   DL  N L G+I PSLGNLK L  L
Sbjct:   14 LLFISIILSCSISASATIAEANALLKWKSTF-TNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTFQDFPFIS-LSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVL 155          

HSP 2 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N + +    LS+ + +G +SP +G L+ L+ L L  N +T  IP ELGN+ S+T L L  N+L G IP SLGNLK L  L
Sbjct:  124 NLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVL 203          

HSP 3 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N  ++ ++ LS    +G++   +G L+ L+ L+L  N +TG IP +LGN+ S+  L+L NN+L G IP SLGNLK L  L
Sbjct:  268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTIL 347          

HSP 4 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N  ++  + LS+   +G++   +G L+ L+ L L  N +TG IP ELGN+ S+  L L NN+L G IP S GNLK L +L
Sbjct:  316 NIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYL 395          

HSP 5 Score: 67.781 bits (164), Expect = 7.513e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N  ++  + LS    +G++   +G L+ L  L L  N +TG IP E+GN+ S+T+L L  N+L G IP SLGNLK L  L
Sbjct:  220 NMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLL 299          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 45/137 (32.85%), Postives = 61/137 (44.53%), Query Frame = 3
Query:   93 LRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNN-------VASVTL-------------------SSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L +S   P +    WN +  +PC W  + C +S+N       V SV L                   S+ N +G +S  IG    L  + L  N + GEIP  LG L +L  L L +N L GKIPP LG+   L+ L
Sbjct:   47 LHSSNSPPPSVFSGWNPSDSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNL 183          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 3
Query:   63 SDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCT--WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +DYQG  L A++  L  P   LR WN +  + C+  W+ + C     V  + L   +  G +S +IG L+ L  L+L  N + G IP  LG + +L  + L NNRL G IP SLG    LQ L
Sbjct:   59 ADYQG--LQAVKQELIDPRGFLRSWNGSGFSACSGGWAGIKCAQGQ-VIVIQLPWKSLGGRISEKIGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTL 178          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-11
Identity = 52/139 (37.41%), Postives = 68/139 (48.92%), Query Frame = 3
Query:   30 IILDCFA--YLALSDYQGDALFALRTSLRV--PNNQLRDWNQNQ-VNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEI-PEELGNLSSLTSLDLENNRLVGKIPPSLG-NLKKLQFL 425
            I+L C +  YL       DA    +  L +  P   L  W+ N  V PC W  V CD ++NV SV LSS    G     +  L +L +L+L  N I G +  ++     +L SLDL  N LVG IP SL  NL  L+FL
Sbjct:    6 ILLLCLSSTYLPSLSLNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPCKWLGVSCDATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFL 144          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.405e-11
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   93 LRTSLRVPNN-QLRDWNQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L +S   P++  L +WN     PC  W+ + C +   +  + + S+    +L   +   R+L  LT+ G  +TG +PE LG+   L  LDL +N LVG IP SL  L+ L+ L
Sbjct:   46 LHSSSPTPSSLSLFNWNSIDNTPCNNWTFITCSSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETL 158          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y2579_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N + +  +TL+S   +G +   +G ++ L  + L  N ++GEIP ++G LSSL  LDL  N L G IPPSLG+LKKL+++
Sbjct:  191 NLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYM 270          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y5458_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.513e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 3
Query:   42 CFAYLALS-------DYQGDALFALRTSLRV---PNNQLRDWNQNQVNP-CTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNL 407
            CF +L ++         + +    L+   RV   P+  L +WN +  +  C+W  V C + N V  + LS  +  GTL+P +  L  L +L L  N ++G+IP E  + + L  LDL +N L G +PP L  +
Sbjct:   14 CFMFLIITLQSRSSLSLESEGFVLLKFRARVDSDPHGTLANWNVSDHDHFCSWFGVTCVD-NKVQMLNLSGCSLGGTLAPELSQLSELRSLILSKNKLSGDIPNEFASFAKLEFLDLRDNNLNGVVPPELNKV 145          
The following BLAST results are available for this feature:
BLAST of FC873277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
Y5977_ARATH1.488e-1231.34Probable leucine-rich repeat receptor-like protein... [more]
FEI1_ARATH1.788e-1232.37LRR receptor-like serine/threonine-protein kinase ... [more]
FLS2_ARATH3.050e-1237.14LRR receptor-like serine/threonine-protein kinase ... [more]
Y1571_ARATH8.875e-1233.33Probable leucine-rich repeat receptor-like protein... [more]
RCH1_ARATH8.875e-1232.85LRR receptor-like serine/threonine-protein kinase ... [more]
IMK3_ARATH8.875e-1237.40Probable leucine-rich repeat receptor-like protein... [more]
RLK5_ARATH1.159e-1137.41Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
RCH2_ARATH4.405e-1133.63Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
Y2579_ARATH5.753e-1142.50Probably inactive leucine-rich repeat receptor-lik... [more]
Y5458_ARATH7.513e-1130.83Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873277 ID=FC873277; Name=FC873277; organism=Citrus clementina; type=EST; length=766bp
TGAATAGCGTGAAGTTGGTCCTTGTTGCTATAATATTGGATTGCTTCGCT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTACCAATGATTCAGGGAGTTCA
AAAAACCCAAGATTGG
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