FC873281

Overview
NameFC873281
Unique NameFC873281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:595..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 7.426e-50
Identity = 94/172 (54.65%), Postives = 122/172 (70.93%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D   RF+  G+PI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+  N AKV PGS+ AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTRRFTCRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSVCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.654e-49
Identity = 87/180 (48.33%), Postives = 120/180 (66.67%), Query Frame = 2
Query:    5 GATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            G    G+M +D+K+RFSI G+P+YH+   S+FS+YTVVH     K+DP APL K+CLL CGV  GLGA WN A V+ GS V +FGLGTV             ++++G+DI+P K ++AK FGVT+F+N  D  +PI QV+  +T GG D+SFEC+G+  +   AL+ C  GWG +V +GV
Sbjct:  120 GMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGV 299          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 1.654e-49
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D   RF+  G+PI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.654e-49
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D   RF+  G+PI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.161e-49
Identity = 97/176 (55.11%), Postives = 120/176 (68.18%), Query Frame = 2
Query:   17 AGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            A  +M D  SRF+  G+ I+HF GTSTF++YTV+H+ +VAKID  APL+KVCL+GCG  TG GA   TAKVEPGS  AVFGLG V             SR+IG+DI+  KF +AK  G T+ VNPKD  KPI +V++++T  GVDYSFE IG+   M AAL  CH  +G SVIVGV
Sbjct:  119 ASALMPDGTSRFTCKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVIVGV 294          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.822e-49
Identity = 100/179 (55.87%), Postives = 122/179 (68.16%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            +G+G +M D  SRF+  G+ I+HF+ TSTF++YTVVH+ SV KIDP APL+KVCL+GCG  TG GA   TAKVEPGSI AVFGLG V             SR+IG+DI+  KF +AK  G TE +NP D  KPI +V+ DLT G GVDYSFE IG    M +A   CH+  GTSV+VGV
Sbjct:  118 SGSG-LMPDGTSRFTCKGKSIHHFISTSTFTEYTVVHENSVVKIDPSAPLEKVCLIGCGFSTGYGAAMQTAKVEPGSICAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKEMGATECINPLDFKKPINEVLFDLTGGEGVDYSFEVIGRTETMISAFTSCHQNLGTSVVVGV 295          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 3.686e-49
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            + D  SRF+  G+PI+HF+G STFSQYTVV + +VAKID  +PL KVCL+GCG  TG G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D++KPIQ+V+ ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTSRFTCRGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLAKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYNKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.813e-49
Identity = 96/177 (54.24%), Postives = 120/177 (67.80%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP----IQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            M D  SRF+ NG+ ++HFMG STFS+YTVV D+S+ K++P+APL+KV LLGCG+ TG GAV NT KVE GS VAV+GLG V              +++GID+   KF+ AK FG TE +NPK  + P     Q  +V+  DGG DY+FECIGNV  MR ALE  HKGWG S I+GVA
Sbjct:  126 MPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCKVEEGSTVAVWGLGAVGLAVIMGAKAAGAKKIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVA 302          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 4.813e-49
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 2
Query:   29 MNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            M D  SRF+  G+PI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +AK  G TE VNP+D+ KPIQ+V+ ++++GGVD+SFE IG +  M AAL CC + +G SVIVGV
Sbjct:  123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGV 294          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.211e-49
Identity = 95/173 (54.91%), Postives = 121/173 (69.94%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            M+ D  SRF+  G+PI+HF+GTSTFSQYTVV +++VAKID  APL+KVCL+GCG  TG G+    AKV PGS  AVFGLG V             SR+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ +++DGGVD+SFE IG +  + AAL  CH   GTSVIVGV
Sbjct:  123 MLLDGTSRFTCKGKPIHHFIGTSTFSQYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFPKAKEVGATECINPQDYKKPIQEVIQEISDGGVDFSFEVIGRLDTVVAALLSCHGACGTSVIVGV 295          
The following BLAST results are available for this feature:
BLAST of FC873281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1B_PAPHA7.426e-5054.65Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADHL6_ARATH1.654e-4948.33Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH1B_PANTR1.654e-4954.65Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN1.654e-4954.65Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1_STRCA2.161e-4955.11Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_NAJNA2.822e-4955.87Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1A_PONAB3.686e-4954.65Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADHX_CAEEL4.813e-4954.24Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH1S_HORSE4.813e-4954.65Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1_RABIT8.211e-4954.91Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873281 ID=FC873281; Name=FC873281; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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