FC873287

Overview
NameFC873287
Unique NameFC873287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 48/139 (34.53%), Postives = 63/139 (45.32%), Query Frame = 3
Query:   75 GDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICD-NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNG------------------------ITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            G+AL + R  +   +  +  W     +PC W  V CD  +  V +++L+     G L P +G L  L  L L  N                         ITG IP E+GNLS L +LDL NN L G IP SLG LK+L
Sbjct:   33 GEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRL 171          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = 3
Query:    6 SVKLVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQ-VNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 419
            S+  + + I    + Y   S  + DAL A + +L  P   L  W+ +    PC W  V C N + V  + L  +  SG +S RI  LR L  L+L+ N   G IP  L   + L S+ L+ N L GK+PP++ NL  L+
Sbjct:    6 SLFFIFLVIYAPLVSYADESQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTN-HRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLE 143          

HSP 2 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  165 WSNVICDNSNNVAS---VTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +S V+ +  +++ S   V LSS +FSG +    G LR L +L+L  N I+G IP E+GN S+L  L+L +NRL+G IP  L  L +L+ L
Sbjct:  536 FSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVL 625          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 51/169 (30.18%), Postives = 72/169 (42.60%), Query Frame = 3
Query:   66 DYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVA-------------------------SVTLSSMNFSGTLSPRIG------------------------VLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            D QG AL + ++ L +  +    W+    +PC W  V C+    V+                         S+TLSS+N +G +   IG                         L+ L TL+L  N + G IP E+GNLS L  L L +N+L G+IP S+G LK LQ L
Sbjct:   26 DQQGQALLSWKSQLNISGDAFSSWHVADTSPCNWVGVKCNRRGEVSEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVL 194          

HSP 2 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 3
Query:  195 NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N+  + L S + SG + P IG    L  L L GN + G IP E+GNL +L  +D+  NRLVG IPP++   + L+FL
Sbjct:  431 NLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISGCESLEFL 507          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 48/142 (33.80%), Postives = 66/142 (46.48%), Query Frame = 3
Query:   75 GDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNS-NNVASVTLSSMNFSG------------------------TLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            G  L  ++ SL  P++ L  WN N  +PC WS V C    ++V SV LSS N +G                        TL   I   ++L TL L  N +TGE+P+ L ++ +L  LDL  N   G IP S G  + L+ L
Sbjct:   20 GFILQQVKLSLDDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVL 161          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 41/123 (33.33%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   42 CLHYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNL 407
            CL      D +  +L  + +S   P      W  N  +PCT W  + C N N +  ++L  M  +GT+SP  G +++L  + L  N +TG IP+EL  L +L +LD+ +N+L GK+P    N+
Sbjct:  314 CLSSPGECDPRVKSLLLIASSFDYPPRLAESWKGN--DPCTNWIGIACSNGN-ITVISLEKMELTGTISPEFGAIKSLQRIILGINNLTGMIPQELTTLPNLKTLDVSSNKLFGKVPGFRSNV 433          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   72 QGDALFALRTSLRV-PNNQLRDWNQNQVNP-CTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            QG AL   R  +   P+  L +WN + +N  C WS V C +   V  + LS  +  GTL+P +  L  L +L L  N  +G IP+E G+  +L  LDL  N L G+IPP L N   L+ L
Sbjct:   29 QGSALLKFRARVNSDPHGTLANWNVSGINDLCYWSGVTCVDGK-VQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLSGQIPPELSNGLSLKHL 147          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   75 GDALFALRTSLRV-PNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            G  L   ++S+ V P + L+ WN    +PC+W  + C+N + V +++L +    G++   +G L TL +L L  N   G +P    N   L  LDL +N + G+IP ++G+L  L
Sbjct:   26 GLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNL 140          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 47/159 (29.56%), Postives = 71/159 (44.65%), Query Frame = 3
Query:   15 LVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICD-NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGI------------------------TGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            L+L++++    +        G+AL + R ++   ++ +  W     +PC W+ V CD  +  V ++ L+     G L P IG L  L  L L  N +                        TG IP E+G+L  L  LD+ +N L G IP SLG LKKL
Sbjct:   14 LLLISLLCSLSNESQAISPDGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKL 172          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 51/148 (34.46%), Postives = 65/148 (43.92%), Query Frame = 3
Query:   54 LALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVT------------------------LSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L+LS   G AL +L+   R   +    W+     PC+W  + C   N V SV+                        LSS N SG + P  G L  L  L L  N ++G IP ELG LS+L  L L  N+L G IP  + NL  LQ L
Sbjct:   25 LSLSS-DGQALLSLK---RPSPSLFSSWDPQDQTPCSWYGITCSADNRVISVSIPDTFLNLSSIPDLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLILNANKLSGSIPSQISNLFALQVL 168          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  126 LRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNL-SSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            LRDWN    + C W+ V C     +  + LS +  +G++SP IG    L  + L  N + G IP  L NL SSL SL L +N L G IP  LG+L  L+ L
Sbjct:   50 LRDWNSGSPSYCNWTGVTC-GGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSL 149          
The following BLAST results are available for this feature:
BLAST of FC873287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
FEI2_ARATH4.165e-1434.53LRR receptor-like serine/threonine-protein kinase ... [more]
Y4361_ARATH9.279e-1433.81Probable LRR receptor-like serine/threonine-protei... [more]
Y4265_ARATH9.279e-1430.18Probable LRR receptor-like serine/threonine-protei... [more]
HSL1_ARATH1.212e-1333.80Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
TMK1_ARATH2.067e-1333.33Probable receptor protein kinase TMK1 OS=Arabidops... [more]
MRH1_ARATH3.526e-1338.33Probable LRR receptor-like serine/threonine-protei... [more]
Y4372_ARATH7.855e-1332.17Probable LRR receptor-like serine/threonine-protei... [more]
FEI1_ARATH7.855e-1329.56LRR receptor-like serine/threonine-protein kinase ... [more]
Y1341_ARATH1.340e-1234.46Probable LRR receptor-like serine/threonine-protei... [more]
GSO2_ARATH2.286e-1240.59LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873287 ID=FC873287; Name=FC873287; organism=Citrus clementina; type=EST; length=756bp
TGAAGAGCGTGAAATTGGTCCTTGTTGCTATAATATTGGATTGCTTGCAT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTAGCAATGATTCANGGAGTTCA
AAGAAG
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