FC873287

Overview
NameFC873287
Unique NameFC873287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 3
Query:  114 PNNQLRDWNQ-NQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            P   L DW     +  C W+ + CD++ +V SV+L      G LSP I  L  L  L L  N  TG+IP E+G L+ L  L L  N   G IP  +  LK + +L
Sbjct:   45 PLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYL 149          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   78 DALFALRTSLRVPNNQ-LRDW--NQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSL---------------------DLE-----NNRLVGKIPPSLGNLKKLQFL 425
            + L  L++S+  P    L DW  + +    C++S V CD+   V S+ +S     GT+SP IG+L  L  LTL  N  TGE+P E+ +L+SL  L                     DLE     NN   GK+PP +  LKKL++L
Sbjct:   29 EVLLNLKSSMIGPKGHGLHDWIHSSSPDAHCSFSGVSCDDDARVISLNVSFTPLFGTISPEIGMLTHLVNLTLAANNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYL 173          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 53/139 (38.13%), Postives = 68/139 (48.92%), Query Frame = 3
Query:   30 IILDCLH--YLALSDYQGDALFALRTSLRV--PNNQLRDWNQNQ-VNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEI-PEELGNLSSLTSLDLENNRLVGKIPPSLG-NLKKLQFL 425
            I+L CL   YL       DA    +  L +  P   L  W+ N  V PC W  V CD ++NV SV LSS    G     +  L +L +L+L  N I G +  ++     +L SLDL  N LVG IP SL  NL  L+FL
Sbjct:    6 ILLLCLSSTYLPSLSLNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPCKWLGVSCDATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFL 144          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 45/137 (32.85%), Postives = 61/137 (44.53%), Query Frame = 3
Query:   93 LRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNN-------VASVTL-------------------SSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L +S   P +    WN +  +PC W  + C +S+N       V SV L                   S+ N +G +S  IG    L  + L  N + GEIP  LG L +L  L L +N L GKIPP LG+   L+ L
Sbjct:   47 LHSSNSPPPSVFSGWNPSDSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNL 183          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 3
Query:   63 SDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCT--WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +DYQG  L A++  L  P   LR WN +  + C+  W+ + C     V  + L   +  G +S +IG L+ L  L+L  N + G IP  LG + +L  + L NNRL G IP SLG    LQ L
Sbjct:   59 ADYQG--LQAVKQELIDPRGFLRSWNGSGFSACSGGWAGIKCAQGQ-VIVIQLPWKSLGGRISEKIGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTL 178          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y1571_ARATH (Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 3
Query:   15 LVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDW----NQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLS--PRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L+ ++IIL C    + +  + +AL   +++    +++L  W    N N    CT W  V C++  ++  + L++    GT    P I  L  L+ + L  N ++G IP + GNLS L   DL  N L G+I PSLGNLK L  L
Sbjct:   14 LLFISIILSCSISASATIAEANALLKWKSTF-TNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTFQDFPFIS-LSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVL 155          

HSP 2 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N + +    LS+ + +G +SP +G L+ L+ L L  N +T  IP ELGN+ S+T L L  N+L G IP SLGNLK L  L
Sbjct:  124 NLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVL 203          

HSP 3 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N  ++ ++ LS    +G++   +G L+ L+ L+L  N +TG IP +LGN+ S+  L+L NN+L G IP SLGNLK L  L
Sbjct:  268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTIL 347          

HSP 4 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N  ++  + LS+   +G++   +G L+ L+ L L  N +TG IP ELGN+ S+  L L NN+L G IP S GNLK L +L
Sbjct:  316 NIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYL 395          

HSP 5 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N  ++  + LS    +G++   +G L+ L  L L  N +TG IP E+GN+ S+T+L L  N+L G IP SLGNLK L  L
Sbjct:  220 NMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLL 299          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   93 LRTSLRVPNN-QLRDWNQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L +S   P++  L +WN     PC  W+ + C +   +  + + S+    +L   +   R+L  LT+ G  +TG +PE LG+   L  LDL +N LVG IP SL  L+ L+ L
Sbjct:   46 LHSSSPTPSSLSLFNWNSIDNTPCNNWTFITCSSQGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETL 158          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 3
Query:   15 LVLVAIILDCLHYLALSDYQGDALFALRTSL--RVPNNQLRDW-NQNQVNPCT-WSNVICDNSN------------------------NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            L++++I+L C   ++ +  + +AL   +++   +  +++L  W N N  + CT W  V C   +                        N+  V LS   FSGT+SP  G    L    L  N + GEIP ELG+LS+L +L L  N+L G IP  +G L K+
Sbjct:   31 LLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKV 192          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y2579_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  186 NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N + +  +TL+S   +G +   +G ++ L  + L  N ++GEIP ++G LSSL  LDL  N L G IPPSLG+LKKL+++
Sbjct:  191 NLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYM 270          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.501e-11
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   63 SDYQGDALFALRTSLRVPNNQLRDWNQNQVNPC--TWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            SD Q  AL  L TSL  P+ QL +W     +PC  +W  + C+ S  V ++ +S +  SGTL   +  L++L  L + GN I   +P +L    +LTSL+L  N L G +P S+  +  L ++
Sbjct:   32 SDVQ--ALQVLYTSLNSPS-QLTNWKNGGGDPCGESWKGITCEGSA-VVTIDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLP--PNLTSLNLARNNLSGNLPYSISAMGSLSYM 148          

HSP 2 Score: 22.3274 bits (46), Expect = 7.501e-11
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  529 TRTLSQNNFSGTIP 570
            T  LS NNFSG +P
Sbjct:  171 TLDLSHNNFSGDLP 184          
The following BLAST results are available for this feature:
BLAST of FC873287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
FLS2_ARATH2.985e-1237.14LRR receptor-like serine/threonine-protein kinase ... [more]
CLV1_ARATH5.092e-1234.48Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
RLK5_ARATH6.650e-1238.13Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
RCH1_ARATH8.685e-1232.85LRR receptor-like serine/threonine-protein kinase ... [more]
IMK3_ARATH8.685e-1237.40Probable leucine-rich repeat receptor-like protein... [more]
Y1571_ARATH1.481e-1133.33Probable leucine-rich repeat receptor-like protein... [more]
RCH2_ARATH4.310e-1133.63Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
Y4885_ARATH5.630e-1130.25Probable LRR receptor-like serine/threonine-protei... [more]
Y2579_ARATH5.630e-1142.50Probably inactive leucine-rich repeat receptor-lik... [more]
SRF8_ARATH7.501e-1134.96Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873287 ID=FC873287; Name=FC873287; organism=Citrus clementina; type=EST; length=756bp
TGAAGAGCGTGAAATTGGTCCTTGTTGCTATAATATTGGATTGCTTGCAT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTAGCAATGATTCANGGAGTTCA
AAGAAG
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