FC873288

Overview
NameFC873288
Unique NameFC873288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:107..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   53 CTWSNVICDN-SNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            C+W  V CDN S NV S  LS++N  G +   +G L  L ++ L+GN + G+IP+E+GN  SL  +D   N L G IP S+  LK+L+FL
Sbjct:   61 CSWRGVFCDNVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFL 150          

HSP 2 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 310
            LS    +G +PP +G L     L L GN +TG+IP ELGN+S L+ L L +N LVGKIPP LG L++L
Sbjct:  295 LSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQL 362          

HSP 3 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 2
Query:   92 VASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            VA+ +L     +G +P  IG+++ L+ L L  N +TG IP  LGNLS    L L  N+L G+IPP LGN+ +L +L
Sbjct:  266 VATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYL 341          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.954e-14
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 2
Query:   50 PCT--WSNVICDNSNNVASE-TLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC   W  VICD S NV     LS+   SG L  +IG L++L TL L  N  +G +P  LGN +SL  LDL NN   G++P   G+L+ L FL
Sbjct:   61 PCNNNWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFL 153          

HSP 2 Score: 23.8682 bits (50), Expect = 4.954e-14
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  433 LSQNNFSGTIPDSLTTLSSFD 495
            +S NN SGTIP+ L   S  +
Sbjct:  179 MSYNNLSGTIPELLGNCSKLE 199          

HSP 3 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N +++ S  +   N +GT+P  +G+LR +S + L  N ++G IP+ELGN SSL +L L +N+L G+IPP+L  LKKLQ L
Sbjct:  266 NCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSL 345          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC+W+ + C + N V      S + SGTL   IG L  L  ++L+ N I+G+IP E+ +L  L +LDL NNR  G+IP S+  L  LQ+L
Sbjct:   62 PCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYL 151          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-13
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC+W  V CD    V +  LSS   SG   P+I  L+ L  + L GNG  G IP +LGN S L  +DL +N   G IP +LG L+ L+ L
Sbjct:   56 PCSWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNL 145          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y1571_ARATH (Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.205e-13
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N  ++    LS+   +G++P  +G L+ L+ L L  N +TG IP ELGN+ S+  L L NN+L G IP S GNLK L +L
Sbjct:  316 NIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYL 395          

HSP 2 Score: 23.0978 bits (48), Expect = 5.205e-13
Identity = 8/21 (38.10%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  433 LSQNNFSGTIPDSLTTLSSFD 495
            LSQN  +G++PDS    +  +
Sbjct:  421 LSQNKLTGSVPDSFGNFTKLE 441          

HSP 3 Score: 72.4034 bits (176), Expect = 1.535e-12
Identity = 54/169 (31.95%), Postives = 84/169 (49.70%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL*VIPSI-------KISLLIYMVFLHL----------FS*SGTKSLDLFLIVEPGL*VKTILVGPSLIHSQLFQALISIQLDSNNLNGQI 535
            N  ++    LS    +G++P  +G L+ L  L L  N +TG IP E+GN+ S+T+L L  N+L G IP SLGNLK L  L +  +        K+  +  M+ L L           S    K+L +  + E  L   T ++ P L +    +++I +QL++N L G I
Sbjct:  220 NMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYL---TGVIPPELGN---MESMIDLQLNNNKLTGSI 382          

HSP 4 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N  ++    LS    +G++P  +G L+ L  L L  N +TG IP ELGN+ S+T L L  N+L G IP +LGNLK L  L
Sbjct:  172 NMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVL 251          

HSP 5 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            LS+ + +G + P +G L+ L+ L L  N +T  IP ELGN+ S+T L L  N+L G IP SLGNLK L  L
Sbjct:  133 LSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVL 203          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-12
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   50 PCTWSNVICDNS-NNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC W+ + C  S ++V    +S+ +  G L P++G +  L  L L GN + G IP+E+GNL +L  LDL NN L+G IP  +G+L  +  +
Sbjct:   56 PCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMII 146          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12
Identity = 44/112 (39.29%), Postives = 53/112 (47.32%), Query Frame = 2
Query:   50 PCTWSNVICD-NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNG------------------------ITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 310
            PC W  V CD  +  V + +L+     G LPP++G L  L  L L  N                         ITG IP E+GNLS L +LDL NN L G IP SLG LK+L
Sbjct:   60 PCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRL 171          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.833e-12
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 2
Query:   50 PCT--WSNVIC-----DNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC   W+ VIC     D   +V    L +MN +G L P++G+L  L+ L    N +TG+IP ELGNL+ L  L L  N+L G +P  LG+L  L  L
Sbjct:   58 PCASNWTGVICIPDPSDGFLHVKELRLLNMNLTGQLAPELGLLSNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLIL 154          

HSP 2 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  119 NFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 313
            + +G +PP++G L  L  L L GN +TG +P+ELG+LS+L  L ++ N + GK+P SL NLKKL+
Sbjct:  112 DLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLILQIDYNEISGKLPTSLANLKKLK 176          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.833e-12
Identity = 59/170 (34.71%), Postives = 83/170 (48.82%), Query Frame = 2
Query:   50 PCT--WSNVICDNSN------NVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL*VIPSIKISLLIYMVFLHLFS*SGTKSLDLFLIVEPGL*VKTILVGPSLIHSQLFQALISIQLDSNNLNGQI 535
            PC   W+ V+C NS       +V+   L SMN SG L P++G L  L+ L+   N ITG IP+E+GN+ SL  L L  N L G +P  LG L  L  +  I   +IS  +   F +L   + TK   +      G     +   PS++H         I LD+NNL+G +
Sbjct:   63 PCNSNWTGVVCFNSTLDDGYLHVSELQLFSMNLSGNLSPELGRLSRLTILSFMWNKITGSIPKEIGNIKSLELLLLNGNLLNGNLPEELGFLPNLDRI-QIDENRISGPLPKSFANL---NKTKHFHMNNNSISGQIPPELGSLPSIVH---------ILLDNNNLSGYL 219          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2
Query:   89 NVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N+    L S + SG +PP IG    L  L L GN + G IP E+GNL +L  +D+  NRLVG IPP++   + L+FL
Sbjct:  431 NLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISGCESLEFL 507          

HSP 2 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLP-PKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC W  V C+    V+   L  M+  G+LP   +  L++L++LTL    +TG IP+E+G+ + L  LDL +N L G IP  +  LKKL+ L
Sbjct:   56 PCNWVGVKCNRRGEVSEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKLKTL 146          
The following BLAST results are available for this feature:
BLAST of FC873288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ERL2_ARATH7.362e-1544.44LRR receptor-like serine/threonine-protein kinase ... [more]
PEPR2_ARATH4.954e-1445.16Leucine-rich repeat receptor-like protein kinase P... [more]
Y2239_ARATH8.139e-1442.22Probable LRR receptor-like serine/threonine-protei... [more]
RPK1_IPONI1.388e-1343.33Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
Y1571_ARATH5.205e-1343.75Probable leucine-rich repeat receptor-like protein... [more]
Y1634_ARATH1.535e-1238.46Probable LRR receptor-like serine/threonine-protei... [more]
FEI2_ARATH3.420e-1239.29LRR receptor-like serine/threonine-protein kinase ... [more]
Y5374_ARATH5.833e-1241.24Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH5.833e-1234.71Probable LRR receptor-like serine/threonine-protei... [more]
Y4265_ARATH7.618e-1244.16Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873288 ID=FC873288; Name=FC873288; organism=Citrus clementina; type=EST; length=535bp
GCGTGTTCCAAACAATCAACAAAAAGATTGAAATCAAAACCAAGTTAATC
CTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTTGCCTCT
GAAACATTGTCTTCCATGAACTTTTCTGGAACCTTGCCCCCAAAAATAGG
AGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCATAACTG
GTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGCTTGGAC
TTGGAAAACAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGGCAATCT
TAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTTCACTTT
TAATCTATATGGTTTTTCTTCACCTTTTTTCATGATCTGGCACCAAAAGT
CTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACAATTTT
AGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTTGATCAGTA
TTCAGCTGGATTCAAATAATCTCAATGGTCAAATT
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