FC873288

Overview
NameFC873288
Unique NameFC873288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:107..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y2579_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  104 TLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            TL+S   +G +P ++G ++ L  + L  N ++GEIP ++G LSSL  LDL  N L G IPPSLG+LKKL+++
Sbjct:  199 TLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYM 270          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 41/96 (42.71%), Postives = 50/96 (52.08%), Query Frame = 2
Query:   50 PCTWSNVICD--------NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 313
            PC W  V C         NS  V S  LSSMN SG + P IG L  L  L L  N +TG+IP E+GN S L  + L NN+  G IP  +  L +L+
Sbjct:   65 PCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLR 160          

HSP 2 Score: 61.6178 bits (148), Expect = 9.613e-11
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            L++  FS  LP +I  L  L T  +  N +TG IP E+ N   L  LDL  N  +G +PP LG+L +L+ L
Sbjct:  524 LAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEIL 594          

HSP 3 Score: 23.8682 bits (50), Expect = 9.613e-11
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  433 LSQNNFSGTIPDSLTTLSSFDQYSAG 510
            LS+N FSG IP ++  L+   +   G
Sbjct:  596 LSENRFSGNIPFTIGNLTHLTELQMG 621          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 9.237e-12
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 313
            LS    +G++PP+ GVL  L  + L GN +TG IP+E GN+++LTSL LE N+L G++P  LGNL  +Q
Sbjct:   94 LSRNYLNGSIPPEWGVL-PLVNIWLLGNRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQ 161          

HSP 2 Score: 25.0238 bits (53), Expect = 9.237e-12
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  433 LSQNNFSGTIPDS---LTTLSSF 492
            LS NNF+G IP +   LTTL  F
Sbjct:  165 LSSNNFNGEIPSTFAKLTTLRDF 187          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 42/114 (36.84%), Postives = 51/114 (44.74%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASET------------------------LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC+W  + C   N V S +                        LSS N SG +PP  G L  L  L L  N ++G IP ELG LS+L  L L  N+L G IP  + NL  LQ L
Sbjct:   55 PCSWYGITCSADNRVISVSIPDTFLNLSSIPDLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLILNANKLSGSIPSQISNLFALQVL 168          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 2
Query:   53 CTWSNVICDNS--------------------------NNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            C+W+ V CDN+                          +N+    LSS N  G +P  +  L +L +L L  N +TGEIP +LG+L ++ SL + +N LVG IP +LGNL  LQ L
Sbjct:   58 CSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQML 172          

HSP 2 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N  N+    L   N  G LP +I  LR L  L L  N  +GEIP+E+GN +SL  +D+  N   G+IPPS+G LK+L  L
Sbjct:  406 NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLL 485          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.011e-11
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            LS   FSG +P  I  L  LS L L GNG +GEIP  +GNL  LT+LDL    + G++P  L  L  +Q +
Sbjct:  459 LSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVI 529          

HSP 2 Score: 23.8682 bits (50), Expect = 2.011e-11
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  433 LSQNNFSGTIPDSLTTLSS 489
            L  NNFSG +P+  ++L S
Sbjct:  531 LQGNNFSGVVPEGFSSLVS 549          

HSP 3 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            LSS +FSG +P   G LR L +L+L  N I+G IP E+GN S+L  L+L +NRL+G IP  L  L +L+ L
Sbjct:  555 LSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVL 625          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 2
Query:   53 CTWSNVICDN-SNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 313
            C+WS V+CDN +  V S  LS  N SG +P +I  L +L  L L GN + G  P  + +L+ LT+LD+  N      PP +  LK L+
Sbjct:   69 CSWSGVVCDNVTAQVISLDLSHRNLSGRIPIQIRYLSSLLYLNLSGNSLEGSFPTSIFDLTKLTTLDISRNSFDSSFPPGISKLKFLK 156          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 310
            LSS  F G+LP +I  L  + TL L GN + G IP+E+GNL +L +L+LE N+L G +P ++G L KL
Sbjct:  679 LSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKL 746          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 50/148 (33.78%), Postives = 71/148 (47.97%), Query Frame = 2
Query:   89 NVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL*VIPSIKISLLIYMVFLHLFS*SGTKSLDLFLIVEPGL*VKTILVGPSLIHSQLFQALISIQLDSNNLNGQ 532
            N+    LS    +G +P   G L  L +L L  N + G+IP E+GN SSL  L+L +N+L GKIP  LGNL +LQ L +  +   S +   +F             L  +   GL  +  LVGP        ++L  + L SNN  G+
Sbjct:  217 NLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLF------------RLTQLTHLGL-SENHLVGPISEEIGFLESLEVLTLHSNNFTGE 351          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 5.719e-11
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   80 NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            N  N+    L   N +G +P   G L+ ++ L +  N ++GEIP E+GN+++L +L L  N+L G IP +LGN+K L  L
Sbjct:  236 NLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVL 315          

HSP 2 Score: 21.9422 bits (45), Expect = 5.719e-11
Identity = 7/21 (33.33%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  433 LSQNNFSGTIPDSLTTLSSFD 495
            +S+N  +G +PDS   L++ +
Sbjct:  341 ISENKLTGPVPDSFGKLTALE 361          
The following BLAST results are available for this feature:
BLAST of FC873288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
Y2579_ARATH7.618e-1247.22Probably inactive leucine-rich repeat receptor-lik... [more]
Y2317_ARATH7.618e-1242.71Probable leucine-rich repeat receptor-like protein... [more]
Y1534_ARATH9.237e-1249.28Probable LRR receptor-like serine/threonine-protei... [more]
Y1341_ARATH1.697e-1136.84Probable LRR receptor-like serine/threonine-protei... [more]
GSO1_ARATH1.697e-1135.65LRR receptor-like serine/threonine-protein kinase ... [more]
Y4361_ARATH2.011e-1145.07Probable LRR receptor-like serine/threonine-protei... [more]
Y5148_ARATH2.895e-1139.77Probable leucine-rich repeat receptor-like protein... [more]
GSO2_ARATH3.781e-1148.53LRR receptor-like serine/threonine-protein kinase ... [more]
FLS2_ARATH4.938e-1133.78LRR receptor-like serine/threonine-protein kinase ... [more]
Y4885_ARATH5.719e-1138.75Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873288 ID=FC873288; Name=FC873288; organism=Citrus clementina; type=EST; length=535bp
GCGTGTTCCAAACAATCAACAAAAAGATTGAAATCAAAACCAAGTTAATC
CTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTTGCCTCT
GAAACATTGTCTTCCATGAACTTTTCTGGAACCTTGCCCCCAAAAATAGG
AGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCATAACTG
GTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGCTTGGAC
TTGGAAAACAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGGCAATCT
TAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTTCACTTT
TAATCTATATGGTTTTTCTTCACCTTTTTTCATGATCTGGCACCAAAAGT
CTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACAATTTT
AGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTTGATCAGTA
TTCAGCTGGATTCAAATAATCTCAATGGTCAAATT
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